View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0651_low_5 (Length: 329)
Name: NF0651_low_5
Description: NF0651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0651_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 83 - 329
Target Start/End: Complemental strand, 36981584 - 36981340
Alignment:
| Q |
83 |
gacatcatcacttttaatactcttatatgcacaattgtgtgtgtcaaccaatttgaagctctttctctcttgcaccaaatgaagagtcataaagtagttc |
182 |
Q |
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| T |
36981584 |
gacatcatcacttttaatactcttatatgcatatttgtgtgt--caaccaatttaaaactcttcctctcttgcaccaaatgaagagtcataaagtagttc |
36981487 |
T |
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| Q |
183 |
ctgacttgttcacatattctacaccgatagaagcattatgcaaagaggggaaacttaaagttgccaagtctgtaatccctataatgcttaagttaggcat |
282 |
Q |
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| T |
36981486 |
ctgacttgttcacatatactacactgatagaagcattatgcaaagaggggaaacttaatgttgccaagtctgtaatccctgtaatgcttaagttaggcat |
36981387 |
T |
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| Q |
283 |
taaacttgacattgttgcatataattctttactcaataagaatgttt |
329 |
Q |
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| T |
36981386 |
taaacttgacattgttgcatataattctttactcaataagaatgttt |
36981340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 313
Target Start/End: Original strand, 37502534 - 37502752
Alignment:
| Q |
95 |
tttaatactcttatatgcacaattgtgtgtgtcaaccaatttgaagctctttctctcttgcaccaaatgaagagtcataaagtagttcctgacttgttca |
194 |
Q |
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| T |
37502534 |
tttaatactcttgtatgcatgtttgcatgtatcaaccaatttcaagctctttatctcttgcaccaaatgaagagttataaagtagttcttgacatgtaca |
37502633 |
T |
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| Q |
195 |
catattctacaccgatagaagcattatgcaaagaggggaaacttaaagttgccaagtctgtaatccctataatgcttaagttaggcattaaacttgacat |
294 |
Q |
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| T |
37502634 |
catacacaacattgatacaatcattatgcaaagaggggaagcttcaagtggccaaatctattatccctagaatgcttaggttaggtattaaacctgatat |
37502733 |
T |
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| Q |
295 |
tgttgcatataattcttta |
313 |
Q |
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| T |
37502734 |
tgtttcatataactcttta |
37502752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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