View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_11 (Length: 399)
Name: NF0652_low_11
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 176 - 399
Target Start/End: Original strand, 18721296 - 18721519
Alignment:
| Q |
176 |
ttggtttctacaacaactactaccaaaacaagtatcaaagatattaccctgctcttcttcctttaccttcacttcaacaactacctttcattccatcttt |
275 |
Q |
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| T |
18721296 |
ttggtttctacaacaactactaccaaaacaagtatcaaagatattaccctgctcttcttcctttaccttcacttcaacaactacctttcattccatcttt |
18721395 |
T |
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| Q |
276 |
ccctcaaaatctcaaaacccatttgcacaaacttccatgcaaactcaacacttctccttcatctgaatacaatctttctcaactttcacttgatcctggt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18721396 |
ccctcaaaatctcaaaacccatttgcacaaacttccatgcaaactcaatacttctccttcatctgaatacaatctttctcaactttcacttgatcctggt |
18721495 |
T |
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| Q |
376 |
aagtaaccaccattcaaacatacc |
399 |
Q |
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|||||||||||||||||||||||| |
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| T |
18721496 |
aagtaaccaccattcaaacatacc |
18721519 |
T |
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