View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0652_low_15 (Length: 363)

Name: NF0652_low_15
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0652_low_15
NF0652_low_15
[»] chr8 (1 HSPs)
chr8 (30-324)||(13262397-13262691)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 13262397 - 13262691
Alignment:
Q  30 cttcaccgcgaagaaatccatgcgcgatgagcttctgaatcgcatcaacggtgggttcggctattttgctgacaccggagctagcggcattgatgagagg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13262397 cttcaccgcgaagaaatccatgcgcgatgagcttctgaatcgcatcaacggcgggttcggctattttgctgacgccggagctagcggcattgatgagagg 13262496  T
Q  130 aagaagaatggattcggattcggttagcgagaattccaccggtccaccatcgtgaagcggaccgggcgtttccggttcggtatcggagggtgaaccggga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13262497 aagaagaatggattcggattcggttagcgagaattccaccggtccaccatcgtgaagcggaccgggcgtttccggttcggtatcggagggtgaaccggga 13262596  T
Q  230 attgttctgttgtcagtgttactgagtctgtcgataatggatttgcattcgtgagcgagttttgcgtgttttcgccatgaagcgtggttgatgat 324  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13262597 attgttctgttgtcagtgttactgagtctgtcaatgatggatttgcattcgtgagcgagttttgcgtgttttcgccatgaagcgtggttgatgat 13262691  T

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