View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_19 (Length: 318)
Name: NF0652_low_19
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 3038289 - 3038450
Alignment:
| Q |
20 |
gacatcatctgcaaagtccaaccaaaagtccaaggttgttggcaaatctgatggcgaagttactaaaaaatccaaggattctgcacaaaaaactggtggt |
119 |
Q |
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| T |
3038289 |
gacaccatctgcaaagtccaaccaaaagtccaaggttgctggcaaatctgatggtgaagttactaaaaaatccaaggattctgcacaaaaaactggtggt |
3038388 |
T |
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| Q |
120 |
aaatccgaggatcgttctgtgaaaagcggtggtaaatctgaggatcgttctgtgaaaagtgg |
181 |
Q |
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| T |
3038389 |
aaatctgaggatcgttctgtgaaaagtggtggtaaatctgaggatcgatctgtgaaaagtgg |
3038450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 147 - 298
Target Start/End: Original strand, 3038383 - 3038534
Alignment:
| Q |
147 |
ggtggtaaatctgaggatcgttctgtgaaaagtggtggtaaatctgaggatcgatctgtgaaaagtggcagcaaatctgttgattctgcacnnnnnnnca |
246 |
Q |
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| T |
3038383 |
ggtggtaaatctgaggatcgttctgtgaaaagtggtggtaaatctgaggatcgatctgtgaaaagtggcagcaaatctgttgattctgcacaaaaaaaca |
3038482 |
T |
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| Q |
247 |
attccaagaagactgatggttccaagacnnnnnnntccaaagatgatgatgt |
298 |
Q |
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| T |
3038483 |
attccaagaagactgatggttccaagacaaaaaaatccaaagatgatgatgt |
3038534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 3038377 - 3038417
Alignment:
| Q |
174 |
aaaagtggtggtaaatctgaggatcgatctgtgaaaagtgg |
214 |
Q |
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| T |
3038377 |
aaaactggtggtaaatctgaggatcgttctgtgaaaagtgg |
3038417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 13204451 - 13204581
Alignment:
| Q |
25 |
catctgcaaagtccaaccaaaagtccaaggttgttggcaaatctgatggcgaagttactaaaaaatccaaggattctgcacaaaaaactggtggtaaatc |
124 |
Q |
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| T |
13204451 |
catctgcaaagtctaaccaaaagtccaaggttgctggcaaatctgacggtgaaggtagtaaaaaatctaaggaatctgcacaaaaaactggtggtaaatc |
13204550 |
T |
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| Q |
125 |
cgaggatcgttctgtgaaaagcggtggtaaa |
155 |
Q |
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| T |
13204551 |
taaggatcgttctgtgaaaagcggttgtaaa |
13204581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 13204540 - 13204581
Alignment:
| Q |
147 |
ggtggtaaatctgaggatcgttctgtgaaaagtggtggtaaa |
188 |
Q |
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| T |
13204540 |
ggtggtaaatctaaggatcgttctgtgaaaagcggttgtaaa |
13204581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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