View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_24 (Length: 284)
Name: NF0652_low_24
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 55 - 277
Target Start/End: Complemental strand, 31338767 - 31338545
Alignment:
| Q |
55 |
catcatcatcatcatcttccactctccaagaaactctcctccggttatcaaactcaatcacatcctctctcgccgcaacatcatacactcctcccaaaac |
154 |
Q |
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| T |
31338767 |
catcatcatcatcatcttccactctccaagaaactctcctccggttatcaaactcaatcacatcctctctcgccgcaacatcatacactcctcccaaaac |
31338668 |
T |
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| Q |
155 |
cgccaccatctccgtcaaagcatttctcgaaccactcctcacaccaacaaattccatcaaagacttcgctctagcatgcgctcttctctcatcctccacc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31338667 |
cgccaccatctccgtcaaagcatttctcgaaccactcctcacaccaacaaattccatcaaagacttcgctctagcatgcgctcttctctcatcctccacc |
31338568 |
T |
|
| Q |
255 |
ctcaccacctccgagcttctctc |
277 |
Q |
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|||| || ||||||||||||||| |
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| T |
31338567 |
ctcatcaactccgagcttctctc |
31338545 |
T |
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