View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_25 (Length: 278)
Name: NF0652_low_25
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 46996141 - 46996350
Alignment:
| Q |
1 |
atgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttc |
100 |
Q |
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| T |
46996141 |
atgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttc |
46996240 |
T |
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| Q |
101 |
aattggagaataaggtttgataaagcattcagaaacgagttttaaacaatgggtgctcatcatttagatgtgtgttgtagcacagagagatctcgtttct |
200 |
Q |
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| T |
46996241 |
aattggaggataaggtttgataaagcattcagaaacgagttttaaacaatgggtgctcatcatttagatgtgtgttgtagcacagagagatctcgtttct |
46996340 |
T |
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| Q |
201 |
tatgaagaca |
210 |
Q |
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|||||||||| |
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| T |
46996341 |
tatgaagaca |
46996350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 46998404 - 46998539
Alignment:
| Q |
1 |
atgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttc |
100 |
Q |
| |
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|||| |||||||||||||||||||| ||||||| ||||| | ||||| |||||| ||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
46998404 |
atgatgttggttttttgaagagaagacccttttgaatatagtatgcagataacatgctaatatcccaaggtcctaaatagcatatttggtttgagtcttc |
46998503 |
T |
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| Q |
101 |
aattggagaataaggtttgataaagcattcagaaac |
136 |
Q |
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| T |
46998504 |
gattgggggacatggtttgataaaacattcagaaac |
46998539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 47002008 - 47002133
Alignment:
| Q |
11 |
ttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttcaattggagaa |
110 |
Q |
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| T |
47002008 |
ttttttgaagagaagtcccttttggatatagtgtgaagatatcatggcaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattggggga |
47002107 |
T |
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| Q |
111 |
taaggtttgataaagcattcagaaac |
136 |
Q |
| |
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|| |||||||| || ||||||||||| |
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| T |
47002108 |
tatggtttgatgaaacattcagaaac |
47002133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 46975338 - 46975473
Alignment:
| Q |
1 |
atgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttc |
100 |
Q |
| |
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|||| |||||||| ||||||||||| ||||||||||||| | | ||| |||||| ||||||||||| ||| || |||||| ||||| |||||||||| |
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| T |
46975338 |
atgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgtgttagatagcatatttggtttgagtcttt |
46975437 |
T |
|
| Q |
101 |
aattggagaataaggtttgataaagcattcagaaac |
136 |
Q |
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|| || | ||||||||| ||||| ||| ||||||| |
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| T |
46975438 |
gatagggggataaggtttaataaaacatgcagaaac |
46975473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 46981328 - 46981465
Alignment:
| Q |
1 |
atgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttc |
100 |
Q |
| |
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|||| |||||||||||||||| ||| |||||||| |||||| | ||| |||||| ||||||||||| ||| |||||| || ||||| |||||||||| |
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| T |
46981328 |
atgatgttggttttttgaagataagtcccttttggttataatgtgtagataacatggcaatatcccaatgtgttaaataacatatttgatttgagtcttt |
46981427 |
T |
|
| Q |
101 |
aattggagaataaggtttgataaagcattcagaaacga |
138 |
Q |
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|||| | ||||||||| ||||| ||| |||||||| |
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| T |
46981428 |
gattgtgggataaggtttaataaaacatgaagaaacga |
46981465 |
T |
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