View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_3 (Length: 657)
Name: NF0652_low_3
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Original strand, 14550515 - 14551069
Alignment:
| Q |
9 |
gaaaaatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataat |
108 |
Q |
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| T |
14550515 |
gaaaaatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataat |
14550614 |
T |
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| Q |
109 |
aataataatgcagtttggtagcattatatatttaactaatgggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaaca |
208 |
Q |
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| T |
14550615 |
aataataatgcagtttggtagcattatatatttaactaataggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaaca |
14550714 |
T |
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| Q |
209 |
atcccgtgtagaacgggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaac |
308 |
Q |
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| T |
14550715 |
atcccgtgtagaacgggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaac |
14550814 |
T |
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| Q |
309 |
gttcaatgccatgaatatctt-nnnnnnnacgcactctgccttaccctgtcctagtgctttgttttgttattgttcactatgagcttctgctattaacct |
407 |
Q |
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| T |
14550815 |
gttcaatgccatgaatatcttccccccccacgcactctgccttaccctgtcttagtgctttgttttgttattgttcactatgagcttctgctattaacct |
14550914 |
T |
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| Q |
408 |
ttagacaattggaggaaccataacactagtcgatttatagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggtt |
507 |
Q |
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| T |
14550915 |
ttagacaattggaggaaccataacacttgtcgatttagagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggtt |
14551014 |
T |
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| Q |
508 |
gggacatttgcttttgggaacaattttcgtactcatgctactactggcatgttac |
562 |
Q |
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| T |
14551015 |
gggacatttgcttttgggaacaattttcgtactcatgctactactggcatgttac |
14551069 |
T |
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