View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0652_low_30 (Length: 262)

Name: NF0652_low_30
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0652_low_30
NF0652_low_30
[»] chr8 (1 HSPs)
chr8 (1-235)||(29157267-29157501)
[»] chr2 (6 HSPs)
chr2 (81-235)||(2596226-2596380)
chr2 (81-235)||(2581537-2581691)
chr2 (108-235)||(2589151-2589278)
chr2 (16-85)||(2596431-2596500)
chr2 (31-85)||(2581743-2581797)
chr2 (165-210)||(2584824-2584869)
[»] chr3 (2 HSPs)
chr3 (133-235)||(21642431-21642533)
chr3 (137-235)||(21620765-21620863)
[»] chr6 (1 HSPs)
chr6 (105-226)||(30399351-30399472)
[»] chr7 (2 HSPs)
chr7 (122-210)||(46769615-46769703)
chr7 (1-49)||(46769773-46769824)
[»] chr4 (2 HSPs)
chr4 (165-227)||(35767245-35767307)
chr4 (165-210)||(19359417-19359462)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29157501 - 29157267
Alignment:
Q  1 catggttccaaacaaacagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaagctattgcagcacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29157501 catggttccaaacaaacagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaagaaacctaaagctattgcagcacca 29157402  T
Q  101 aaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctctctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaa 200  Q
    |||  ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29157401 aaaagctcatttcttcctttcctccaatcatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaa 29157302  T
Q  201 ccattgtattggatcgatagttctagtccgctttg 235  Q
    ||||||||||||||||||| ||||||||| |||||    
T  29157301 ccattgtattggatcgataattctagtcctctttg 29157267  T

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Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 2596380 - 2596226
Alignment:
Q  81 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctctctaaatgatagaaaccaagctttca 180  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||| |||||     
T  2596380 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccataaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcg 2596281  T
Q  181 acaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttg 235  Q
    ||| ||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  2596280 acataaaccttggcagagaaccattgtatttcatcgataattctagtccgctttg 2596226  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 2581691 - 2581537
Alignment:
Q  81 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctctctaaatgatagaaaccaagctttca 180  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  2581691 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgtcagaaaccaagctttca 2581592  T
Q  181 acaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttg 235  Q
    ||| |||||||| || ||||||||| ||||  || |||| |||||||||||||||    
T  2581591 acataaaccttgacaaagaaccattctatttcatggataattctagtccgctttg 2581537  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 2589278 - 2589151
Alignment:
Q  108 cctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctctctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgt 207  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||| |||||||   ||||||||| ||||||||| ||||||||| |||||||||||||    
T  2589278 cctttctttttttcctctaaccatcccacaaatgtcttgacgtgctttctaaatatcagaaaccaaactttcaacataaaccttggtagagaaccattgt 2589179  T
Q  208 attggatcgatagttctagtccgctttg 235  Q
    |||  || |||| |||||||||||||||    
T  2589178 atttcattgataattctagtccgctttg 2589151  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 2596500 - 2596431
Alignment:
Q  16 acagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 85  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||| |||||||||    
T  2596500 acagaagagttataaaacaaaacaattattacattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2596431  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 2581797 - 2581743
Alignment:
Q  31 aacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 85  Q
    ||||||| |||||||||||||||||||||||| ||||||  |||| |||||||||    
T  2581797 aacaaaaaaattattaaattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2581743  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 2584869 - 2584824
Alignment:
Q  165 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 210  Q
    ||||||||| ||||||||| || ||||| |||||||||||||||||    
T  2584869 agaaaccaaactttcaacataagccttgacagagaaccattgtatt 2584824  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 21642431 - 21642533
Alignment:
Q  133 ccacaaatgtcttgacgtgctctctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgct 232  Q
    ||||||||||||||||||||| ||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  21642431 ccacaaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaaccattgtatttcatcgataattctagtccgct 21642530  T
Q  233 ttg 235  Q
    |||    
T  21642531 ttg 21642533  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 21620765 - 21620863
Alignment:
Q  137 aaatgtcttgacgtgctctctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttg 235  Q
    ||||||||||||||||| ||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  21620765 aaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaaccattgtatttcatcgataattctagtccgctttg 21620863  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 30399472 - 30399351
Alignment:
Q  105 cctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctctctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccat 204  Q
    ||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||||||  ||||||||| ||||||||| ||||||||| ||||||||||    
T  30399472 cctccattcttcctttcatctaaccagcgcacaaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggtagagaaccat 30399373  T
Q  205 tgtattggatcgatagttctag 226  Q
    ||||||  ||||||| ||||||    
T  30399372 tgtatttcatcgataattctag 30399351  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 46769703 - 46769615
Alignment:
Q  122 ctccaaccatcccacaaatgtcttgacgtgctctctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 210  Q
    ||||| ||||||||||||||||||||| |||| ||||||||  |||||| || ||||||||  ||||||||||||||||||| ||||||    
T  46769703 ctccagccatcccacaaatgtcttgacatgctttctaaatgtaagaaacaaaactttcaacgtaaaccttggcagagaaccaatgtatt 46769615  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46769824 - 46769773
Alignment:
Q  1 catggttccaaacaaacagaaga---gttataaaacaaaacaattattaaat 49  Q
    |||| ||||||||||||||||||   |||||||||||||| |||||||||||    
T  46769824 catgcttccaaacaaacagaagaagagttataaaacaaaataattattaaat 46769773  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 35767307 - 35767245
Alignment:
Q  165 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagt 227  Q
    ||||||||||||||| ||| ||||||||| ||||||||| ||||||  |||  ||||||||||    
T  35767307 agaaaccaagctttcgacataaaccttggtagagaaccagtgtattctatcagtagttctagt 35767245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 19359462 - 19359417
Alignment:
Q  165 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 210  Q
    ||||||||||||||||||| || ||||| |||||||||||| ||||    
T  19359462 agaaaccaagctttcaacataagccttgacagagaaccattttatt 19359417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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