View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_34 (Length: 252)
Name: NF0652_low_34
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 14356906 - 14357010
Alignment:
| Q |
33 |
actcctacaccaacactgaacaacaacaacgacactactcttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggta |
132 |
Q |
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|||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14356906 |
actcgtacacctacattgaacaacaacaacgacactactcttctgtctctcttccattttgcttctaacacagatcttcctccaattcttcatcttggta |
14357005 |
T |
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| Q |
133 |
gtatg |
137 |
Q |
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||||| |
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| T |
14357006 |
gtatg |
14357010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 14357053 - 14357122
Alignment:
| Q |
184 |
aattcatgttctataagctaggaattgattataaagttgcaat-ttttatgtatataaattaaaaggtca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14357053 |
aattcatgttctataagctaggaattgattataaagttgcaatcttttatgtatataaattaaaaggtca |
14357122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 29658107 - 29658008
Alignment:
| Q |
38 |
tacaccaacactgaacaacaacaacgacactactcttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggtagtatg |
137 |
Q |
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| T |
29658107 |
tacaccaacattgaacaacaacaacgacattactcttttgtctctcttccatttttcttttaacacagatctctctccaattcttcatcttggtagtatg |
29658008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 29657962 - 29657899
Alignment:
| Q |
184 |
aattcatgttctataagctaggaattgattataaagttgcaat-ttttatgtatataaattaaa |
246 |
Q |
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| T |
29657962 |
aattcatgttctataagctaggaattgattataaagttgcaatcttttatgtatataaattaaa |
29657899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 5548303 - 5548201
Alignment:
| Q |
38 |
tacaccaacactgaacaacaacaacgacact--------actcttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttg |
129 |
Q |
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|||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
5548303 |
tacaccaacattcaacaacaacaacgacactctgcatacactcttctgtctctcttccattttgcttccaacatagatctctctccaattcttcatcttg |
5548204 |
T |
|
| Q |
130 |
gta |
132 |
Q |
| |
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||| |
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|
| T |
5548203 |
gta |
5548201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 21730700 - 21730756
Alignment:
| Q |
78 |
tctctcttccattttgcttctaacatagatct-tc-ctccaattcttcatcttggta |
132 |
Q |
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||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
21730700 |
tctctcttccattttgcttctaacacagatctctctctccaattcttcatcttggta |
21730756 |
T |
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