View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0652_low_36 (Length: 251)

Name: NF0652_low_36
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0652_low_36
NF0652_low_36
[»] chr7 (5 HSPs)
chr7 (44-225)||(14608996-14609176)
chr7 (58-225)||(16028460-16028624)
chr7 (51-156)||(24881410-24881515)
chr7 (44-140)||(1449857-1449953)
chr7 (44-140)||(21823479-21823574)
[»] chr3 (1 HSPs)
chr3 (44-156)||(547407-547519)
[»] scaffold0118 (1 HSPs)
scaffold0118 (44-156)||(10061-10173)
[»] chr6 (1 HSPs)
chr6 (44-156)||(194824-194936)
[»] chr1 (3 HSPs)
chr1 (44-140)||(8542295-8542391)
chr1 (44-140)||(8607534-8607630)
chr1 (44-156)||(36301840-36301954)
[»] chr4 (1 HSPs)
chr4 (74-156)||(16289231-16289313)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 14609176 - 14608996
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatcgga 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  14609176 ttttataaaccacaaaccatatttaaaattatatatagttatgaatatgccaaagataataatcaaattctcacaacaatcaacacaaaatttaatcgga 14609077  T
Q  144 acaagaagtcatatttataaaatgtcttaggtaataggnnnnnnnnttctcatcggaaatgttggaaataaagtttccatga 225  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||  ||||||||||||||||||| ||||||    
T  14609076 acaagaagtcatatttataaaatgtcttaggtaatagg-aaaaaatttctcatcaaaaatgttggaaataaagttcccatga 14608996  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 16028624 - 16028460
Alignment:
Q  58 aaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatcggaacaagaagtcatat 157  Q
    ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16028624 aaccatatttaaa-ttatatatagttatgaacatgccaattataataatcaaattctcacaacaatcaacacaaaattcaatcggaacaagaagtcatat 16028526  T
Q  158 ttataaaatgtcttaggtaataggnnnnnnnnttctcatcggaaatgttggaaataaagtttccatga 225  Q
    |||| |||||| ||||||||||||        ||||||||  ||||||||||||||||||||||||||    
T  16028525 ttat-aaatgttttaggtaatagg-aaaaaatttctcatcaaaaatgttggaaataaagtttccatga 16028460  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 24881515 - 24881410
Alignment:
Q  51 aaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatcggaacaagaa 150  Q
    ||||||||||||| |||| ||| |||||||||||| ||||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||  ||||||||    
T  24881515 aaccacaaaccatttttagaatcatatatagttatcaacatgcaaaatctaataataaaattctcataacaatcgacacaatattcaatcaaaacaagaa 24881416  T
Q  151 gtcata 156  Q
    ||||||    
T  24881415 gtcata 24881410  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 1449857 - 1449953
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatc 140  Q
    |||||| ||||| ||| ||| |||  ||| |||||||||||| |||||| |||||||||||| |||||||||| ||| |||||||||| ||||||||    
T  1449857 ttttatgaaccaaaaatcatttttggaatcatatatagttatcaacatgtcaaatctaataaacaaattctcaaaaccatcaacacaatattcaatc 1449953  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 21823479 - 21823574
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatc 140  Q
    |||||| ||||||||| ||| |||| ||  |||||||||||| |||||| |||||||||||| |||||||||| ||| |||||||||| ||||||||    
T  21823479 ttttatgaaccacaaatcatttttagaac-atatatagttatcaacatgtcaaatctaataaacaaattctcataaccatcaacacaatattcaatc 21823574  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 547407 - 547519
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatcgga 143  Q
    |||||| |||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||  |    
T  547407 ttttatgaaccacaagccatttttagaattatatatagttatcaacatgccaaatctaataatcaaattctcataacaatcaacacaatattcaatcaaa 547506  T
Q  144 acaagaagtcata 156  Q
    |||||||||||||    
T  547507 acaagaagtcata 547519  T

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Target: scaffold0118 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 10173 - 10061
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatcgga 143  Q
    |||||| ||||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||| ||| |||| ||||| ||||||||  |    
T  10173 ttttatgaaccacaaaccatttttaaaatcatatatagttatcaacatgcaaaatctaataatcaaattctcataaccatcagcacaatattcaatcaaa 10074  T
Q  144 acaagaagtcata 156  Q
    |||||||||||||    
T  10073 acaagaagtcata 10061  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 194936 - 194824
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatcgga 143  Q
    |||||| |||||||| | || |||| ||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||       
T  194936 ttttatgaaccacaagctatttttagaatcatatatagttatcaacgtgccaaatctaatgatcaaattctcacaacaatcaacacaatattcaatcacc 194837  T
Q  144 acaagaagtcata 156  Q
    | |||||||||||    
T  194836 ataagaagtcata 194824  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 8542295 - 8542391
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatc 140  Q
    |||||| ||||||||| ||| |||| ||| |||||||||||| |||||| |||||||||||| |||||||||| ||| |||||||||| ||||||||    
T  8542295 ttttatgaaccacaaatcatttttagaatcatatatagttatcaacatgtcaaatctaataaacaaattctcataaccatcaacacaatattcaatc 8542391  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 8607534 - 8607630
Alignment:
Q  44 ttttataaaccacaaaccatatttaaaattatatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatc 140  Q
    |||||| ||||||||| ||| |||| ||| |||||||||||| |||||| |||||||||||| |||||||||| ||| |||||||||| ||||||||    
T  8607534 ttttatgaaccacaaatcatttttagaatcatatatagttatcaacatgtcaaatctaataaacaaattctcataaccatcaacacaatattcaatc 8607630  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 36301840 - 36301954
Alignment:
Q  44 ttttataaaccacaaaccatat-ttaaaattatatatagttatgaacatgccaaatctaataatcaaattc-tcacaacaatcaacacaaaattcaatcg 141  Q
    |||||| |||||||| |||| | ||| ||| ||||||||| || |||||||||||||||| ||||| |||| |||||| | ||||||||| ||||||||     
T  36301840 ttttatgaaccacaagccatttcttagaatcatatatagtcatcaacatgccaaatctaacaatcacattcttcacaatagtcaacacaatattcaatca 36301939  T
Q  142 gaacaagaagtcata 156  Q
     ||||||||||||||    
T  36301940 aaacaagaagtcata 36301954  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 16289231 - 16289313
Alignment:
Q  74 atatatagttatgaacatgccaaatctaataatcaaattctcacaacaatcaacacaaaattcaatcggaacaagaagtcata 156  Q
    |||||||||||| |||| |  |||||||||||||||||||| | || ||| ||||||  ||||||||  ||||||||||||||    
T  16289231 atatatagttatcaacaaggaaaatctaataatcaaattcttataataatgaacacagtattcaatcaaaacaagaagtcata 16289313  T

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