View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_4 (Length: 569)
Name: NF0652_low_4
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 1272228 - 1271934
Alignment:
| Q |
22 |
catcactccctaacctaaagaacaaatctcaatgattgtcatcgacaagttttctgctaaatcaaataataatctaaacctatcgcatcacacacctccc |
121 |
Q |
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| T |
1272228 |
catcactccctaacctaaagaacacatctcaatgattgtcatcgacaagttttctgctaaatcaaataatcatctaaacctatcgcatcacacacctccc |
1272129 |
T |
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| Q |
122 |
tttaaccagaataatatattagttccacccccacaacgacacccttaccaaactctcatcaagccaacttcccaccccgaacttactcctctacaaatgg |
221 |
Q |
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| T |
1272128 |
tttaaccagaataatatattagttccacccccacaacggcacccctacaaaactctcatcaagccaacttcccaccccgaacttactcctctacaaatgg |
1272029 |
T |
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| Q |
222 |
ctgagatagcacgcaaccaaccggatcacgtcgacccttatttcttcaccctaccatcctccccccataacgagcaactaaaaccttataccaga |
316 |
Q |
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| T |
1272028 |
ctgagatatcacgcaaccaactggatcacgtcgacccttatttcttcaccctaccatcctccccccttaacgagcaactaaaaccttataccaga |
1271934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 339 - 479
Target Start/End: Complemental strand, 1271945 - 1271806
Alignment:
| Q |
339 |
ccttataccagaaatttgactgctccacctgcaacctccaacaccacctttctatcagggtcatattaaattatccaaccctcctacctcaaccccccat |
438 |
Q |
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| T |
1271945 |
ccttataccagaa-tttgactgctccacctgcaacctccaacaccacctttctatcatagtcatattaaattatccaacccttctacctcaaccccccat |
1271847 |
T |
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| Q |
439 |
ttctccttgtgtagactaaatagaattataaatgtaggatt |
479 |
Q |
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| T |
1271846 |
ttctccttgtgtagactaaatagaattataaatgtaggatt |
1271806 |
T |
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