View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_40 (Length: 249)
Name: NF0652_low_40
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13031468 - 13031698
Alignment:
| Q |
1 |
ttagtgaatgatttaggggtttttgggttatgattattgcattggagtttaggactattaggaacagaacaagttgttgaagaaattgaggttttgcaac |
100 |
Q |
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| T |
13031468 |
ttagtgaatgatttaggggtttttgggttatgattattgcattggagtttaggactattaggaacagaacaagttgttgaagaaattgaggttttgcaac |
13031567 |
T |
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| Q |
101 |
gaagagtggaggaaccggttgaggaaggttgagattgagttctaggtgttgatgggtttgagaaaaaaccaaacttggaagttattctaggactttgatt |
200 |
Q |
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| T |
13031568 |
gaagagtggaggaaccagttgaggaaggttgagattgagttctaggtgttgatgggtttgagaaaaaaccaaacttggaagttattctaggactttgatt |
13031667 |
T |
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| Q |
201 |
tgttgaggaattttcacaatgttgatgatgt |
231 |
Q |
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| T |
13031668 |
tgttgaggaattttcacaatgttgatgatgt |
13031698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13101651 - 13101881
Alignment:
| Q |
1 |
ttagtgaatgatttaggggtttttgggttatgattattgcattggagtttaggactattaggaacagaacaagttgttgaagaaattgaggttttgcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13101651 |
ttagtgaatgatttaggggtttttgggttatgattattgcattggagtttaggactattaggaacagaacaagttgttgaagaaattgaggttttgcaac |
13101750 |
T |
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| Q |
101 |
gaagagtggaggaaccggttgaggaaggttgagattgagttctaggtgttgatgggtttgagaaaaaaccaaacttggaagttattctaggactttgatt |
200 |
Q |
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| T |
13101751 |
gaagagtggaggaaccagttgaggaaggttgagattgagttctaggtgttgatgggtttgagaaaaaaccaaacttggaagttattctaggactttgatt |
13101850 |
T |
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| Q |
201 |
tgttgaggaattttcacaatgttgatgatgt |
231 |
Q |
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| T |
13101851 |
tgttgaggaattttcacaatgttgatgatgt |
13101881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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