View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0652_low_41 (Length: 242)

Name: NF0652_low_41
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0652_low_41
NF0652_low_41
[»] chr2 (11 HSPs)
chr2 (28-147)||(4730682-4730801)
chr2 (34-145)||(35243106-35243218)
chr2 (45-95)||(12419537-12419587)
chr2 (45-95)||(12431597-12431647)
chr2 (34-97)||(20105337-20105402)
chr2 (34-71)||(39711724-39711761)
chr2 (48-96)||(39228901-39228949)
chr2 (45-96)||(5136187-5136238)
chr2 (48-95)||(9848112-9848159)
chr2 (45-96)||(18482108-18482159)
chr2 (51-84)||(38002026-38002059)
[»] scaffold0174 (1 HSPs)
scaffold0174 (28-147)||(30562-30681)
[»] chr1 (6 HSPs)
chr1 (28-147)||(2688393-2688512)
chr1 (1-45)||(2688520-2688564)
chr1 (48-95)||(48563257-48563304)
chr1 (48-95)||(50959523-50959570)
chr1 (54-84)||(19757765-19757795)
chr1 (48-78)||(29013825-29013855)
[»] chr7 (5 HSPs)
chr7 (45-93)||(10623350-10623398)
chr7 (48-101)||(10019743-10019796)
chr7 (41-82)||(28302166-28302207)
chr7 (51-88)||(5907018-5907055)
chr7 (48-84)||(27900348-27900384)
[»] chr4 (3 HSPs)
chr4 (22-74)||(21481176-21481228)
chr4 (48-96)||(1745438-1745486)
chr4 (48-83)||(38011672-38011707)
[»] chr8 (3 HSPs)
chr8 (50-95)||(1029736-1029781)
chr8 (48-95)||(41566184-41566231)
chr8 (48-96)||(11954595-11954643)
[»] chr5 (1 HSPs)
chr5 (34-101)||(24099420-24099486)
[»] chr3 (2 HSPs)
chr3 (30-96)||(28159065-28159130)
chr3 (30-84)||(28180530-28180583)
[»] chr6 (3 HSPs)
chr6 (48-84)||(29032701-29032737)
chr6 (48-95)||(8210013-8210060)
chr6 (22-76)||(17459206-17459258)
[»] scaffold0756 (1 HSPs)
scaffold0756 (48-79)||(4094-4125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (30-95)||(353236-353297)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 4730682 - 4730801
Alignment:
Q  28 taaactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggcgtgt 127  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| |||    
T  4730682 taaacccgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagttctaacgcgtcagattgtaacttgttgtgtttggtggcatgt 4730781  T
Q  128 acgcttgactctctgatgat 147  Q
    ||||||||||||||||||||    
T  4730782 acgcttgactctctgatgat 4730801  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 35243106 - 35243218
Alignment:
Q  34 cgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggcgtgtacgctt 133  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||| || |||| | || |||| ||||||||||||||||||||| |||  ||||    
T  35243106 cgaaagggtctgtttggttactagcgtaatggactcatccctcgatctgatatgtaacacatcagattgtaacttgttgtgtttggtggcatgtctgctt 35243205  T
Q  134 -gactctctgatg 145  Q
     ||||||||||||    
T  35243206 ggactctctgatg 35243218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 12419587 - 12419537
Alignment:
Q  45 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| ||||||    
T  12419587 gtttggttactaacgtattggactcatccctagatctgagttcttacgcgt 12419537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 12431647 - 12431597
Alignment:
Q  45 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| ||||||    
T  12431647 gtttggttactaacgtattggactcatccctagatctgagttcttacgcgt 12431597  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 20105337 - 20105402
Alignment:
Q  34 cgaaagggtctgtttggttact--aacgtattggactcatcccacgatctgagatctaacgcgtcg 97  Q
    |||||||||||| |||||||||  ||||||||||||||||| | ||||||||| ||| ||||||||    
T  20105337 cgaaagggtctgattggttactttaacgtattggactcatcactcgatctgagttcttacgcgtcg 20105402  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 39711761 - 39711724
Alignment:
Q  34 cgaaagggtctgtttggttactaacgtattggactcat 71  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  39711761 cgaaagggtctgtttggttactaacgtattgaactcat 39711724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 39228901 - 39228949
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 96  Q
    |||||||||||||||| |||||||||| ||||||||| ||| |||||||    
T  39228901 tggttactaacgtattcgactcatccctcgatctgagttcttacgcgtc 39228949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 5136187 - 5136238
Alignment:
Q  45 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 96  Q
    |||||| || |||||||||||||||||||| ||||||||| ||| |||||||    
T  5136187 gtttggctattaacgtattggactcatccctcgatctgagttcttacgcgtc 5136238  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 9848112 - 9848159
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    |||||||| |||||||||||||||||| ||||||||| ||| ||||||    
T  9848112 tggttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 18482159 - 18482108
Alignment:
Q  45 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 96  Q
    ||||||||| |||| ||||||||||||||| ||||||||| ||| |||||||    
T  18482159 gtttggttattaacatattggactcatccctcgatctgagttcttacgcgtc 18482108  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 38002026 - 38002059
Alignment:
Q  51 ttactaacgtattggactcatcccacgatctgag 84  Q
    |||||||||||||||||||||||| |||||||||    
T  38002026 ttactaacgtattggactcatccctcgatctgag 38002059  T

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Target: scaffold0174 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 30562 - 30681
Alignment:
Q  28 taaactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggcgtgt 127  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||| |||||     
T  30562 taaacccgaaagggtctgtttggttactaacgtattggactcatcccacgatatgagttctaacgcgtcagattgtaacttgttgtgtttggttgcgtgc 30661  T
Q  128 acgcttgactctctgatgat 147  Q
    | ||||||||||||||||||    
T  30662 aggcttgactctctgatgat 30681  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 2688512 - 2688393
Alignment:
Q  28 taaactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggcgtgt 127  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||| ||||    
T  2688512 taaacccgaaagagtctgtttggttactaacgtattggactcatcccacgatctgagttctaacgcatcagattgtaacttgttgtgtttggtggtgtgt 2688413  T
Q  128 acgcttgactctctgatgat 147  Q
      |||||||||| |||||||    
T  2688412 gtgcttgactctttgatgat 2688393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2688564 - 2688520
Alignment:
Q  1 cagtcttgaccttttgctttcgtttcataaactcgaaagggtctg 45  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  2688564 cagtcttgaccttttgctttggtttcataaacccgaaagggtctg 2688520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 48563257 - 48563304
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    ||||||||||| |||||||||||||||||||||| || ||| ||||||    
T  48563257 tggttactaacatattggactcatcccacgatctaagttcttacgcgt 48563304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 50959570 - 50959523
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    |||||||| |||||||||||||||||| ||||||||| ||| ||||||    
T  50959570 tggttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 19757765 - 19757795
Alignment:
Q  54 ctaacgtattggactcatcccacgatctgag 84  Q
    |||||||||||||||||||||||||||||||    
T  19757765 ctaacgtattggactcatcccacgatctgag 19757795  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 29013855 - 29013825
Alignment:
Q  48 tggttactaacgtattggactcatcccacga 78  Q
    |||||||||||||||||||||||||||||||    
T  29013855 tggttactaacgtattggactcatcccacga 29013825  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 10623350 - 10623398
Alignment:
Q  45 gtttggttactaacgtattggactcatcccacgatctgagatctaacgc 93  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  10623350 gtttggttactaacgtattggactcatccctcgatctgagttctaacgc 10623398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 10019796 - 10019743
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggatt 101  Q
    ||||||||||||||||||||||||||| |||| |||| ||| ||||||| ||||    
T  10019796 tggttactaacgtattggactcatccctcgatttgagttcttacgcgtctgatt 10019743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 28302207 - 28302166
Alignment:
Q  41 gtctgtttggttactaacgtattggactcatcccacgatctg 82  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  28302207 gtctatttggttactaacgtattggactcatccctcgatctg 28302166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 5907018 - 5907055
Alignment:
Q  51 ttactaacgtattggactcatcccacgatctgagatct 88  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  5907018 ttactaacgtattggactcatccctcgatatgagatct 5907055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 27900384 - 27900348
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgag 84  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  27900384 tggttactaacatattggactcatccctcgatctgag 27900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 21481228 - 21481176
Alignment:
Q  22 gtttcataaactcgaaagggtctgtttggttactaacgtattggactcatccc 74  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  21481228 gtttcaaaaactcgaaagggtctgtttggttactcacgaattggactcatccc 21481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 1745438 - 1745486
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 96  Q
    ||||||||||||||||||||||||||| | ||||||| ||| |||||||    
T  1745438 tggttactaacgtattggactcatccctcaatctgagttcttacgcgtc 1745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 38011707 - 38011672
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctga 83  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38011707 tggttactaacgtattggactcatccctcgatctga 38011672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 1029781 - 1029736
Alignment:
Q  50 gttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  1029781 gttactaacgtattggactcatcccacgatctgagttcttacgcgt 1029736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 41566184 - 41566231
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  41566184 tggttactaacgtattagactcatcccacgatctgagttcttacgcgt 41566231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 11954643 - 11954595
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 96  Q
    |||||| ||||||||||||||||||||  |||||||| ||| |||||||    
T  11954643 tggttattaacgtattggactcatccctggatctgagttcttacgcgtc 11954595  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 24099420 - 24099486
Alignment:
Q  34 cgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggatt 101  Q
    |||||||||||||| ||||| |||||||||| ||||||||| ||||||||| | | ||||||||||||    
T  24099420 cgaaagggtctgtt-ggttattaacgtattgaactcatccctcgatctgagtttttacgcgtcggatt 24099486  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 28159130 - 28159065
Alignment:
Q  30 aactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 96  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||||||| |||||||||||| ||| ||||    
T  28159130 aactcaaaagggt-tgtttggttactaacatattgaactcatccctcgatctgagatcaaacacgtc 28159065  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 28180583 - 28180530
Alignment:
Q  30 aactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgag 84  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||| | |||||||    
T  28180583 aactcaaaagggt-tgtttggttactaacgtattgaactcatccctcaatctgag 28180530  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 29032701 - 29032737
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgag 84  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29032701 tggttactaacgtattggactcatccctcgatctgag 29032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 8210013 - 8210060
Alignment:
Q  48 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| ||||||    
T  8210013 tggttactaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 17459258 - 17459206
Alignment:
Q  22 gtttcataaactcgaaagggtctgtttggttactaacgtattggactcatcccac 76  Q
    |||||| |||| |||||||||||||  | ||||||||||||||||||||||||||    
T  17459258 gtttcaaaaacccgaaagggtctgt--gattactaacgtattggactcatcccac 17459206  T

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Target: scaffold0756 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 4094 - 4125
Alignment:
Q  48 tggttactaacgtattggactcatcccacgat 79  Q
    ||||||||||||||||||||||||||||||||    
T  4094 tggttactaacgtattggactcatcccacgat 4125  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 353297 - 353236
Alignment:
Q  30 aactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgt 95  Q
    ||||||||||||||||    |||||| || ||||||||||||||| ||||||||| ||| ||||||    
T  353297 aactcgaaagggtctg----gttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

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