View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_45 (Length: 225)
Name: NF0652_low_45
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 6851423 - 6851221
Alignment:
| Q |
12 |
acatcatcattttcgtctaactgcaaagataatgtatatataaactcttcctaatttataccggagcgtttcatattataaaatctgaaatacaagacta |
111 |
Q |
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| T |
6851423 |
acatcatcattttcgtctgactgcaaaggtaatgtgtatataaactcttcctaatttgtaccggagcgtttcatattataaaatctgaaatacaagacta |
6851324 |
T |
|
| Q |
112 |
tgataatggctgcatagaggatgagatccacgtgagaatcatattcacactatgttgttatagcatttattttgacataattgtttccagaatcactaac |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6851323 |
tgataatagctgcatagaggatgagatccacgtgagaatcatattcacactatgttgttatagcatttattttgacataattgtttccaaaatcactaac |
6851224 |
T |
|
| Q |
212 |
tct |
214 |
Q |
| |
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||| |
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|
| T |
6851223 |
tct |
6851221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 23710834 - 23710790
Alignment:
| Q |
12 |
acatcatcattttcgtctaactgcaaagataatgtatatataaac |
56 |
Q |
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| T |
23710834 |
acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaac |
23710790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 6162350 - 6162306
Alignment:
| Q |
12 |
acatcatcattttcgtctaactgcaaagataatgtatatataaac |
56 |
Q |
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| T |
6162350 |
acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaac |
6162306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 9635368 - 9635412
Alignment:
| Q |
12 |
acatcatcattttcgtctaactgcaaagataatgtatatataaac |
56 |
Q |
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|||||||||||||| ||| | |||||||||||||| ||||||||| |
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| T |
9635368 |
acatcatcattttcatctgagtgcaaagataatgtgtatataaac |
9635412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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