View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0652_low_46 (Length: 221)

Name: NF0652_low_46
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0652_low_46
NF0652_low_46
[»] chr4 (9 HSPs)
chr4 (1-208)||(4009917-4010124)
chr4 (7-205)||(4025150-4025348)
chr4 (11-208)||(4002220-4002417)
chr4 (96-208)||(3954498-3954610)
chr4 (1-206)||(3801509-3801714)
chr4 (71-206)||(4218566-4218701)
chr4 (15-205)||(3809940-3810130)
chr4 (1-208)||(3986916-3987123)
chr4 (11-67)||(3954430-3954486)
[»] chr5 (1 HSPs)
chr5 (15-208)||(13397871-13398064)
[»] chr8 (5 HSPs)
chr8 (168-209)||(7092860-7092901)
chr8 (164-209)||(7012932-7012977)
chr8 (180-209)||(7023416-7023445)
chr8 (180-209)||(7075419-7075448)
chr8 (180-208)||(7036514-7036542)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4010124 - 4009917
Alignment:
Q  1 ttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaactttt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4010124 ttaaccaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaagaacatttttgaaagaaaaactttt 4010025  T
Q  101 ttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4010024 ttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttctt 4009925  T
Q  201 gatgatgt 208  Q
    ||||||||    
T  4009924 gatgatgt 4009917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 4025348 - 4025150
Alignment:
Q  7 aaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctac 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||     
T  4025348 aaaattgctctgaatatgaaggttgttgttttttggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctag 4025249  T
Q  107 actattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatga 205  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||| ||||| || |||||||||||| ||||||||||| |||||||||||||||||    
T  4025248 actattagcagaagatgtgaaaatcgattcaccaaatgggttgtctagttatattgagagaaggattggccgtatgaaggtccttattgttcttgatga 4025150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 4002417 - 4002220
Alignment:
Q  11 ttgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacacta 110  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||  ||| |||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  4002417 ttgctctgaatatgaaggtttttgttttttggaaaaggtaagtgaagaatcaggaaggcatggaataacatttttaaaagaaaagcttttttctacacta 4002318  T
Q  111 ttagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt 208  Q
    ||||||||||||||||||||   ||| ||||||||| |||||||||||| |  ||| | |||||| ||||||||||||||||||||||||||||||||    
T  4002317 ttagcagaagatgtgaaaattaattcaccaaatgggctgtctaattatattcagaggatgattggccgtatgaaggttcttattgttcttgatgatgt 4002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 3954498 - 3954610
Alignment:
Q  96 cttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattg 195  Q
    |||||||| |||||||||||||||||||||||||||  ||| |||||||||||||||||| ||| |  |||||||||||| |||||||||||||||||||    
T  3954498 cttttttcaacactattagcagaagatgtgaaaatcgattcaccaaatgggttgtctaataatattcagagaaggattggccgtatgaaggttcttattg 3954597  T
Q  196 ttcttgatgatgt 208  Q
    |||||||||||||    
T  3954598 ttcttgatgatgt 3954610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3801714 - 3801509
Alignment:
Q  1 ttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaactttt 100  Q
    ||||| ||||| ||| ||||||||| |||||||||||| ||  ||| || ||   | |||||||||| | |||||||||| |||  |||||||| |||||    
T  3801714 ttaaccaaaatcgctttgaatatgatggttgttgttttatgtcaaatgtgagtttggaattaggaaggcgtggaataacaatttaaaaagaaaagctttt 3801615  T
Q  101 ttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttctt 200  Q
    |||||  ||||||   |||||||||||||||  ||| |||||||||||||||||| ||| |   ||||||||||| ||||||||||||||||||| ||||    
T  3801614 ttctaacctattaaatgaagatgtgaaaatcgattcaccaaatgggttgtctaataatattcatagaaggattggccgtatgaaggttcttattgatctt 3801515  T
Q  201 gatgat 206  Q
    ||||||    
T  3801514 gatgat 3801509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 4218701 - 4218566
Alignment:
Q  71 tggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaagg 170  Q
    ||||||||||||||| |||||||  ||||||||||  ||||||   |||||||||||||||  |||  ||||||||||||||||| ||| |   ||||||    
T  4218701 tggaataacatttttaaaagaaatgcttttttctaacctattaaatgaagatgtgaaaatcgattcatcaaatgggttgtctaataatattcatagaagg 4218602  T
Q  171 attggtcgtatgaaggttcttattgttcttgatgat 206  Q
    ||||  ||||||||||||||||||||||||||||||    
T  4218601 attgaccgtatgaaggttcttattgttcttgatgat 4218566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 3810130 - 3809940
Alignment:
Q  15 tctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattag 114  Q
    ||||||||||| ||||||||||| |||||||||||||| ||  | |||  ||||||||||||    | ||| ||| | ||||||||||||| |||||| |    
T  3810130 tctgaatatgatggttgttgtttcttggaaaaggtaagtgaagagttaacaagacatggaatggattctttaaaaaataaacttttttctaaactattgg 3810031  T
Q  115 cagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatga 205  Q
    ||||||||||||||||   | | |||||| ||||| ||| | ||| || |||  ||||||| || |||||||||||||| |||||||||||    
T  3810030 cagaagatgtgaaaattgatacaccaaattggttgcctagtgatattgagaggcggattggccgcatgaaggttcttatcgttcttgatga 3809940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 3987123 - 3986916
Alignment:
Q  1 ttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaactttt 100  Q
    ||||| ||||| ||||||||||||| |||||||||||||||| |||||| || ||  | |||  |  ||||||||||  || ||| |||||||  |||||    
T  3987123 ttaaccaaaatcgctctgaatatgatggttgttgttttttggcaaaggtgagtgaaaagttaaaattacatggaatagaatctttaaaagaaaccctttt 3987024  T
Q  101 ttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttctt 200  Q
    | ||| | |||| || ||||||||||||||   | | |||||| ||||||| | | ||| || |||| | ||||| || ||||||||||||||  |||||    
T  3987023 tactaaaatattggccgaagatgtgaaaattgatacaccaaataggttgtccagtgatattgagagacgaattggacgcatgaaggttcttatcattctt 3986924  T
Q  201 gatgatgt 208  Q
    ||||||||    
T  3986923 gatgatgt 3986916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 3954430 - 3954486
Alignment:
Q  11 ttgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaag 67  Q
    |||||||||||||||||||||||||||||||| |||||| || ||  ||||||||||    
T  3954430 ttgctctgaatatgaaggttgttgttttttggcaaaggtgagtgacgaattaggaag 3954486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 13398064 - 13397871
Alignment:
Q  15 tctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattag 114  Q
    |||||||||||||| ||||||||||||| |||||| || ||  |||||||||| ||||||||| | ||||| |||||||| ||| |||||||||||||||    
T  13398064 tctgaatatgaaggatgttgttttttggcaaaggtgagtgaagaattaggaaggcatggaatagcgtttttaaaagaaaagcttgtttctacactattag 13397965  T
Q  115 cagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt 208  Q
    |||||||||| ||||||  |||  ||||||||||| ||| ||||| |  |||||||||||| | ||||||||||||||||||||||||||||||    
T  13397964 cagaagatgtaaaaatcgattcatcaaatgggttgcctagttatattcagagaaggattggccatatgaaggttcttattgttcttgatgatgt 13397871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 7092901 - 7092860
Alignment:
Q  168 aggattggtcgtatgaaggttcttattgttcttgatgatgtc 209  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  7092901 aggattcgtcgtatgaaggttcttattgttcttgacgatgtc 7092860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 7012932 - 7012977
Alignment:
Q  164 gagaaggattggtcgtatgaaggttcttattgttcttgatgatgtc 209  Q
    ||||||| || ||||||||||||||||| |||||||||| ||||||    
T  7012932 gagaaggctttgtcgtatgaaggttcttgttgttcttgacgatgtc 7012977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 209
Target Start/End: Original strand, 7023416 - 7023445
Alignment:
Q  180 atgaaggttcttattgttcttgatgatgtc 209  Q
    ||||||||||||||||||||||||||||||    
T  7023416 atgaaggttcttattgttcttgatgatgtc 7023445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 7075448 - 7075419
Alignment:
Q  180 atgaaggttcttattgttcttgatgatgtc 209  Q
    ||||||||||||||||||||||||||||||    
T  7075448 atgaaggttcttattgttcttgatgatgtc 7075419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 7036514 - 7036542
Alignment:
Q  180 atgaaggttcttattgttcttgatgatgt 208  Q
    |||||||||||||||||||||||||||||    
T  7036514 atgaaggttcttattgttcttgatgatgt 7036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University