View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_5 (Length: 507)
Name: NF0652_low_5
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 124 - 459
Target Start/End: Complemental strand, 16780715 - 16780380
Alignment:
| Q |
124 |
agattgatcagcctctgcatagcttttgatatttcttgcagcacgtggagcaagagcattctaaaacacaggaaataagatcaaacacttataaagaata |
223 |
Q |
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| T |
16780715 |
agattgatcagcctctgcatagcttttgatatttcttgcagcacgtggagcaagagcattctaaaacacaggaaataagatcaaacaattataaagaata |
16780616 |
T |
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| Q |
224 |
catcataaaataagattaggatcaaacctctgcttgagcgacagaatcagcctttatccaccggctccagaaactaccatcatcttcatcattacaaaaa |
323 |
Q |
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| T |
16780615 |
catcataaaataagattaggatcaaacctctgcttgagcgacagaatcagcctttatccaccggctccagaaactaccatcatcttcatcattacaaaaa |
16780516 |
T |
|
| Q |
324 |
tttgcaacctgcatagaagaaatatgaaacacacaaacagcttagcatatttcccactactgtccaaatctatcctatcccattctgaaaaataaactac |
423 |
Q |
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| T |
16780515 |
tttgcaacctgcatagaagaaatatgaaacacacaaacagcttagcatatttcccactactgtccaaatctatcctatcccattctgaaaaataaactac |
16780416 |
T |
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| Q |
424 |
cataacaaagaagaaagatgaaagagatacagctta |
459 |
Q |
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| T |
16780415 |
cataacaaagaagaaagatgaaagagatacagctta |
16780380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 16780818 - 16780748
Alignment:
| Q |
21 |
catcaatcattgatatcacatgagctgaataatctgctttccttcgtttcggaatccgctctgttggttca |
91 |
Q |
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| T |
16780818 |
catcaatcattgatatcacatgagctgaataatctgctttccttcgtttcggaatccgctctgttggttca |
16780748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 39201846 - 39201902
Alignment:
| Q |
124 |
agattgatcagcctctgcatagcttttgatatttcttgcagcacgtggagcaagagc |
180 |
Q |
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| T |
39201846 |
agatggatcagcctcggcatagcttttaatatttcttgcagaacgtggagcaagagc |
39201902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 39202072 - 39202133
Alignment:
| Q |
275 |
ctttatccaccggctccagaaactaccatcatcttcatcattacaaaaatttgcaacctgca |
336 |
Q |
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| T |
39202072 |
ctttatccaacgactccagaaacttgcatcatcttcatcattgcaaaaattagcaacctgca |
39202133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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