View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_6 (Length: 476)
Name: NF0652_low_6
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 51 - 455
Target Start/End: Original strand, 46406943 - 46407347
Alignment:
| Q |
51 |
acatcatcatgaatacagaaaccccaaactacccctcgccggagttccaatcggaaaacccagaccacgtcctcgaaattgtcctcgaaaccgtcctcca |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46406943 |
acatcatcatgaatacagaaaccccaaactacccctcgccggagttccaatcggaaaacccagaccacgtcctcgaaattgtcctcgaaaccgtcctcca |
46407042 |
T |
|
| Q |
151 |
cttcctcacctcctgccgcgaccgtaacgccgcctcattagtctgcaaatcatggtaccgctcggaagctctcaccagatccgacctcttcatcggaaat |
250 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46407043 |
cttcctcacctcccgccgcgaccgtaacgccgcctcattagtctgcaaatcatggtaccgcacggaagctctcaccagatccgacctcttcatcggaaat |
46407142 |
T |
|
| Q |
251 |
tgctactccgtctccccccgccgtgctacatcccggttcagccgcatccggtccgtcaccatcaaaggcaaaccgcggttcgctgatttcgatatgatgc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46407143 |
tgctactccgtctccccccgccgtgctacatcccggttcagccgcatccggtccgtcaccatcaaaggcaaaccgcggttcgctgatttcgatatgatgc |
46407242 |
T |
|
| Q |
351 |
cggttgattggggggcccacttctctccgtgggtcgctactttcgctgctgcatacccatggcttgagaagtttcatcttaagcgaatgtctgttactga |
450 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46407243 |
cggttgattggggggcccacttctctccgtgggtcactactttcgctgctgcatacccatggcttgagaagtttcatcttaagcgaatgtctgttactga |
46407342 |
T |
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| Q |
451 |
tgatg |
455 |
Q |
| |
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||||| |
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| T |
46407343 |
tgatg |
46407347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 13512760 - 13512863
Alignment:
| Q |
219 |
ctctcaccagatccgacctcttcatcggaaattgctactccgtctccccccgccgtgctacatcccggttcagccgcatccggtccgtcaccatcaaagg |
318 |
Q |
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|||||||||||||||| |||||||||| || | ||||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
13512760 |
ctctcaccagatccgaactcttcatcgaaattcgctactccgtctccccca-ctgtgctacatcccagttcaatcgcatccggtccgtcaccatcaaagg |
13512858 |
T |
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| Q |
319 |
caaac |
323 |
Q |
| |
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||||| |
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| T |
13512859 |
caaac |
13512863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 372
Target Start/End: Original strand, 27537641 - 27537843
Alignment:
| Q |
170 |
gaccgtaacgccgcctcattagtctgcaaatcatggtaccgctcggaagctctcaccagatccgacctcttcatcggaaattgctactccgtctcccccc |
269 |
Q |
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||||| ||| |||||||||| ||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||| | ||||||| | |
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| T |
27537641 |
gaccgaaactccgcctcattggtctgtcgttcatggtaccgtgcggaagccctcacacgatccgacctcttcatcggaaactgctacgcactctccccac |
27537740 |
T |
|
| Q |
270 |
gccgtgctacatcccggttcagccgcatccggtccgtcaccatcaaaggcaaaccgcggttcgctgatttcgatatgatgccggttgattggggggccca |
369 |
Q |
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| || || | || |||||||||||| || || || | || || || ||| |||| || ||||||||| ||||||| ||||||||||||||||| |
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| T |
27537741 |
gacgcgccgtcgctcgtttcagccgcatcaaatcggttactgttaagggtaagccgaggtttgcggatttcgatctgatgcctgttgattggggggccca |
27537840 |
T |
|
| Q |
370 |
ctt |
372 |
Q |
| |
|
||| |
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|
| T |
27537841 |
ctt |
27537843 |
T |
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