View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0652_low_8 (Length: 421)
Name: NF0652_low_8
Description: NF0652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0652_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 40984710 - 40984889
Alignment:
| Q |
29 |
acccatgacgtataaaaattcaaaatcattcctttctattgaatttgtaataaatcgaaaattgaatattttgttgtttacctgggtttgaagatattgg |
128 |
Q |
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| T |
40984710 |
acccatgacgtataaaaattaaaaatcattcctttctattgaatttctaataaatcgaaaattgaatattttgttgtttacctgggtttgaagatattgg |
40984809 |
T |
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| Q |
129 |
tctaattcatcgtgttgttgtttgatttgagaaacaagtccttgtggtaatagagatgagaaagatgaagagtgacaacc |
208 |
Q |
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| T |
40984810 |
tctaattcatcgtgttgttgtttgatttgagaaacaagtccttgtggtaatagagatgagaaagatgaagagtgacaacc |
40984889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 320 - 410
Target Start/End: Original strand, 40984992 - 40985082
Alignment:
| Q |
320 |
atgattatggagttgagaaagatgaataatttgagaaggttgaggaggttgtaaagagaaatgattaataacgttaggggatgttccttct |
410 |
Q |
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| T |
40984992 |
atgattatggagttgagaaagatgaataatttgagaaggttgaggaggttgtaaagagaaatgattaataacgttaggggatgttccttct |
40985082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 40984947 - 40984982
Alignment:
| Q |
266 |
atcatcaaatgataaacgaaggccagtggagacatt |
301 |
Q |
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| T |
40984947 |
atcatcaaatgataaacgaaggccagtggagacatt |
40984982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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