View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_high_11 (Length: 357)
Name: NF0653_high_11
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 4031582 - 4031249
Alignment:
| Q |
6 |
attactatgcctcgtcatctgtatatcgcgtgaaaaatgggtcctcttttgtgcatatggtgctgccctcgctataaaagaaaaaagagatatattattg |
105 |
Q |
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| T |
4031582 |
attactatgcctcgtcatctgtatatcgcgtgaaaaatgggtcctcttttgtgcatatggtgctgccctcgctataaaagaaaaaagagatatattattg |
4031483 |
T |
|
| Q |
106 |
tgatttcaaattaagacactatccatgtacaactacaagatcatatacatctagaaaaagctcaatgcagtaacagcatattaagatattaacatcctta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031482 |
tgatttcaaattaagacactatccatgtacaactacaagatcatatacatctagaaaaagctcaatgcagtaacagcatattaagatattaacatcctta |
4031383 |
T |
|
| Q |
206 |
cctgcaatttgctgagcccggatgatattcttccgccttttacaccagcaaactgaacatgtaatcagaagtagaaaagtnnnnnnngcacctaagccaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
4031382 |
cctgcaatttgctgagcccggatgatattcttccgccttttacaccagcaaactgaacaggtaatcagaagtagaaaagtaaaaaaagcacctaagccaa |
4031283 |
T |
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| Q |
306 |
tgccaactttagcaccggcagaaagatgatgtcc |
339 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
4031282 |
tgccaactttagcaccggcagaaagatgaggtcc |
4031249 |
T |
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