View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_high_19 (Length: 251)

Name: NF0653_high_19
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_high_19
NF0653_high_19
[»] chr4 (9 HSPs)
chr4 (1-184)||(30275574-30275757)
chr4 (56-135)||(11097966-11098045)
chr4 (56-135)||(11556393-11556472)
chr4 (56-133)||(18220368-18220445)
chr4 (70-153)||(16284586-16284670)
chr4 (26-120)||(15872437-15872530)
chr4 (26-135)||(15890014-15890122)
chr4 (37-117)||(12229341-12229420)
chr4 (55-132)||(18556495-18556572)
[»] chr5 (5 HSPs)
chr5 (54-184)||(23960433-23960564)
chr5 (57-117)||(13937393-13937453)
chr5 (64-134)||(24831597-24831667)
chr5 (26-135)||(24759207-24759315)
chr5 (69-158)||(17458410-17458500)
[»] chr3 (16 HSPs)
chr3 (34-179)||(19908148-19908294)
chr3 (26-153)||(16359134-16359261)
chr3 (50-135)||(14481197-14481282)
chr3 (50-135)||(17791344-17791429)
chr3 (50-135)||(19099784-19099869)
chr3 (26-135)||(21975638-21975746)
chr3 (26-135)||(21998069-21998177)
chr3 (26-121)||(22160233-22160327)
chr3 (26-135)||(13926428-13926536)
chr3 (26-135)||(22924301-22924409)
chr3 (39-121)||(19185312-19185393)
chr3 (34-135)||(13928826-13928926)
chr3 (26-114)||(5943553-5943640)
chr3 (5-100)||(16642711-16642805)
chr3 (7-105)||(14062382-14062480)
chr3 (8-105)||(14054653-14054750)
[»] scaffold0737 (1 HSPs)
scaffold0737 (50-135)||(3239-3324)
[»] chr7 (6 HSPs)
chr7 (50-135)||(20026443-20026528)
chr7 (56-164)||(13477203-13477312)
chr7 (26-153)||(37945374-37945501)
chr7 (64-112)||(4531365-4531413)
chr7 (5-105)||(15866879-15866979)
chr7 (94-177)||(2889131-2889215)
[»] chr6 (6 HSPs)
chr6 (26-135)||(8403366-8403474)
chr6 (49-111)||(9191498-9191560)
chr6 (64-135)||(7682176-7682247)
chr6 (80-135)||(14970565-14970620)
chr6 (68-114)||(10906324-10906370)
chr6 (55-132)||(19546919-19546996)
[»] chr2 (6 HSPs)
chr2 (50-135)||(24786616-24786701)
chr2 (56-113)||(44586051-44586108)
chr2 (56-134)||(23656030-23656108)
chr2 (49-113)||(32251782-32251846)
chr2 (1-60)||(29637437-29637496)
chr2 (97-183)||(29637503-29637590)
[»] chr1 (3 HSPs)
chr1 (37-113)||(1566683-1566758)
chr1 (5-105)||(13881859-13881958)
chr1 (5-105)||(51626595-51626695)
[»] chr8 (1 HSPs)
chr8 (50-135)||(29294323-29294408)
[»] scaffold0145 (1 HSPs)
scaffold0145 (70-153)||(13047-13131)
[»] scaffold0385 (1 HSPs)
scaffold0385 (26-121)||(14657-14751)
[»] scaffold0166 (1 HSPs)
scaffold0166 (26-135)||(1701-1809)
[»] scaffold0118 (1 HSPs)
scaffold0118 (26-135)||(10531-10640)
[»] scaffold0319 (1 HSPs)
scaffold0319 (5-105)||(13172-13271)
[»] scaffold0048 (1 HSPs)
scaffold0048 (56-114)||(87201-87259)
[»] scaffold0218 (1 HSPs)
scaffold0218 (5-105)||(14791-14890)
[»] scaffold0094 (1 HSPs)
scaffold0094 (55-132)||(4281-4358)
[»] scaffold0091 (1 HSPs)
scaffold0091 (5-105)||(29472-29571)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-100)||(131196-131290)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 30275757 - 30275574
Alignment:
Q  1 aacaactttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |    
T  30275757 aacaactttatatcgtagtacttcgtctcacgttcatcgtcatctataacaccgaccattcctataatcttaacttcattctaatttaaagttattattt 30275658  T
Q  101 caccttatcattacttttgacgtcatcaactttccaactaaaacttcattatattttagggttttaatttctcgttaccggtcg 184  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  30275657 caccttatcattactttcgacgtcatcaactttcccactaaaacttcattatattttagggttttaatatctcgttaccagtcg 30275574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 11098045 - 11097966
Alignment:
Q  56 ccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||    
T  11098045 ccattcccctaatcttaacttcgttctaatttaaagttattatctcaccttatcattaattttgacttcagaaactttcc 11097966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 11556393 - 11556472
Alignment:
Q  56 ccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||| |||||||||    
T  11556393 ccattcccctaatcttaacttcattctaatttaaagttattatctcaccatatcattaatttcgacttcagcaactttcc 11556472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 18220445 - 18220368
Alignment:
Q  56 ccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaacttt 133  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| ||| |||||||    
T  18220445 ccattcccctaatcttaacttcattctaatataaagttattatctcaccttatcattaatttcgacttcaacaacttt 18220368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 16284670 - 16284586
Alignment:
Q  70 ttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc-aactaaaacttcattata 153  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||||  || ||| |||||||||  |||||||||||||||||    
T  16284670 ttaacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattata 16284586  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 15872530 - 15872437
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttga 120  Q
    |||||| ||| |||||||||||| ||||||| ||||  ||||||||||||| || ||||||||||||||||||||||   ||||| |||||||||    
T  15872530 tctcacattcgtcgtcatctata-catcgactattctcctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttga 15872437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 15890122 - 15890014
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| |||||||||||| ||||||| |||   ||||||||||||| || ||||||||||||||||||||||   ||||| |||||||||| |||    
T  15890122 tctcacattcgtcgtcatctata-catcgactattttcctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgacatca 15890024  T
Q  126 tcaactttcc 135  Q
      ||||||||    
T  15890023 gaaactttcc 15890014  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 12229341 - 12229420
Alignment:
Q  37 tcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttt 117  Q
    |||||||||||| ||||||| ||||  ||||||||||||| || ||||||| ||||||||||||||| |||||| ||||||    
T  12229341 tcgtcatctata-catcgactattctcctaatcttaacttaatcctaatttgaagttattatctcactttatcagtacttt 12229420  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 18556572 - 18556495
Alignment:
Q  55 accattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactt 132  Q
    |||||||  ||||||| ||| || ||||||||||||||||||||| ||| ||||||||||||| ||| |||| |||||    
T  18556572 accattctcctaatctgaacctcgttctaatttaaagttattatcgcactttatcattactttcgacttcataaactt 18556495  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 23960564 - 23960433
Alignment:
Q  54 gaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc-aactaaaacttcattat 152  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||   | |||||| ||||||    
T  23960564 gaccatgcctccaaccttaacttcattctaatttaaagttattatctcaccttaccattacttttgacgtcagcaactttcctcgccaaaactccattat 23960465  T
Q  153 attttagggttttaatttctcgttaccggtcg 184  Q
    |  ||| ||| ||| ||||||| |||||||||    
T  23960464 aacttaaggtcttattttctcgataccggtcg 23960433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 13937393 - 13937453
Alignment:
Q  57 cattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttt 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13937393 cattcttctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttt 13937453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 24831667 - 24831597
Alignment:
Q  64 ctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttc 134  Q
    |||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||    
T  24831667 ctaatcttaactccgttctaatttaaagttactatctcaccttatcattaattttgacttcaacaactttc 24831597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 24759207 - 24759315
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| | |||||||||| |||||||||||   ||||  ||||| |||||||| |||||||||||||||||| |||||| ||||||| ||| |||    
T  24759207 tctcacattcgtagtcatctata-catcgaccattatcctaactttaacctcattctattttaaagttattatctcatcttatcgttactttcgacttca 24759305  T
Q  126 tcaactttcc 135  Q
     |||||||||    
T  24759306 gcaactttcc 24759315  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 17458410 - 17458500
Alignment:
Q  69 cttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttc-caactaaaacttcattatatttta 158  Q
    ||||| ||||||||| |||||||||||||||||| |||||  ||||||| ||| | | |||| |||   ||||||||||||||||| ||||    
T  17458410 cttaatttcattctattttaaagttattatctcatcttatagttactttcgactttaacaaccttcttcactaaaacttcattataattta 17458500  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 19908294 - 19908148
Alignment:
Q  34 tcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaacttt 133  Q
    |||| ||||| ||||| |||||||||| |   |||||||||||  ||||||||||||||||||||||||||||||| ||||||| || |||| |||||||    
T  19908294 tcattgtcatttataatatcgaccatttccaaaatcttaacttatttctaatttaaagttattatctcaccttatcgttactttcgatgtcagcaacttt 19908195  T
Q  134 -ccaactaaaacttcattatattttagggttttaatttctcgttacc 179  Q
     || | ||||||||||||| ||||||||||| |||| |||| |||||    
T  19908194 ccccaataaaacttcattacattttagggttctaatctctcattacc 19908148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 16359261 - 16359134
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| |||||||||||| ||||||| ||||  ||||||||||||| || ||||||||||||||||||||||   ||||| |||||||||| |||    
T  16359261 tctcacattcgtcgtcatctata-catcgactattctcctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgacatca 16359163  T
Q  126 tcaactttcc-aactaaaacttcattata 153  Q
      ||||||||  ||||| |||||||||||    
T  16359162 gaaactttcctcactaagacttcattata 16359134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 14481282 - 14481197
Alignment:
Q  50 catcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||| ||||| | |||||||||||| | |||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||    
T  14481282 catcgtccatttccctaatcttaactccgttctaatttaaagttactgtctcaccttatcattaattttgacttcaacaactttcc 14481197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 17791344 - 17791429
Alignment:
Q  50 catcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||| ||||| | |||||||||||||  ||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||||||||    
T  17791344 catcgtccatttccctaatcttaactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcc 17791429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 19099784 - 19099869
Alignment:
Q  50 catcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||| ||||| | |||||||||||||  ||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||||||||    
T  19099784 catcgtccatttccctaatcttaactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcc 19099869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 21975638 - 21975746
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| |||||||||||| ||||||| ||||  ||||||||||||| || |||||||||| |||||||||||| |||||| |||| ||||| |||    
T  21975638 tctcacattcgtcgtcatctata-catcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttca 21975736  T
Q  126 tcaactttcc 135  Q
      ||||||||    
T  21975737 gaaactttcc 21975746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 21998069 - 21998177
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| |||||||||||| ||||||| ||||  ||||||||||||| || |||||||||| |||||||||||| |||||| |||| ||||| |||    
T  21998069 tctcacattcgtcgtcatctata-catcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttca 21998167  T
Q  126 tcaactttcc 135  Q
      ||||||||    
T  21998168 gaaactttcc 21998177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 22160233 - 22160327
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgac 121  Q
    |||||| ||| |||||||||||| ||||||| ||||  ||||||||||||| || |||||||||| |||||||||||| |||||| |||| |||||    
T  22160233 tctcacattcgtcgtcatctata-catcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgac 22160327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 13926536 - 13926428
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||||||||||||||||  ||||| | |||   ||| ||||||||||||||| ||||||||||||| | || |||||| ||||||||||| |||    
T  13926536 tctcacattcatcgtcatctatat-atcgatccttctcttaaccttaacttcattctattttaaagttattaccccatcttatcgttacttttgacttca 13926438  T
Q  126 tcaactttcc 135  Q
     |||||||||    
T  13926437 gcaactttcc 13926428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 22924301 - 22924409
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| ||||||| |||| |||||| |||||   ||| ||||||||||||||| |||||||||||||||||| |||||  ||||||| ||| |||    
T  22924301 tctcacattcgtcgtcatatata-catcgatcattctattaaacttaacttcattctattttaaagttattatctcatcttatagttactttcgacttca 22924399  T
Q  126 tcaactttcc 135  Q
     |||||||||    
T  22924400 acaactttcc 22924409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 19185312 - 19185393
Alignment:
Q  39 gtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgac 121  Q
    |||||||||| ||||||| ||||  ||||||||||||| || ||||||| ||||||||||||||  |||||| ||||||||||    
T  19185312 gtcatctata-catcgactattctcctaatcttaacttaatcctaatttgaagttattatctcattttatcagtacttttgac 19185393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 13928926 - 13928826
Alignment:
Q  34 tcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaacttt 133  Q
    ||||| |||||||||  ||||| |||||  |||| ||||||||||||||| ||||||||||||| | || |||||| ||||||| ||| ||| |||||||    
T  13928926 tcatcatcatctatat-atcgatcattctcctaaccttaacttcattctattttaaagttattaccccatcttatctttactttcgacttcagcaacttt 13928828  T
Q  134 cc 135  Q
    ||    
T  13928827 cc 13928826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 5943640 - 5943553
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattac 114  Q
    |||||| ||| |||||||||||| ||| ||||||||  |||||||||| ||  ||||||||| || |||||||| ||||||||||||||    
T  5943640 tctcacattcctcgtcatctata-cattgaccattctcctaatcttaattttgttctaatttgaaattattatcacaccttatcattac 5943553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 16642711 - 16642805
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatct 100  Q
    |||||||||| || |||||  |||||||||| ||||||||||| |||||| ||  ||| ||||||||||||||||| ||| ||||| ||||||||||    
T  16642711 actttatatcttattacttgttctcacgttcgtcgtcatctat-acatcgtcc-gtcccctaatcttaacttcattttaattttaatgttattatct 16642805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 14062480 - 14062382
Alignment:
Q  7 tttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatctcacct 105  Q
    |||||||| || |||||  |||||||||| |||||| ||||  ||||| || | || ||||||||||||||||| ||| |||||||||||||||| ||||    
T  14062480 tttatatcttattacttgttctcacgttcgtcgtcacctatg-catcgtccgtccccctaatcttaacttcattttaattttaaagttattatctaacct 14062382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 14054750 - 14054653
Alignment:
Q  8 ttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatctcacct 105  Q
    ||||||| || |||||  |||||||||| |||||| ||||  ||||| || | || ||||||||||||||||| ||| |||||||||||||||| ||||    
T  14054750 ttatatcttattacttgttctcacgttcgtcgtcacctatg-catcgtccgtccccctaatcttaacttcattttaattttaaagttattatctaacct 14054653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 3324 - 3239
Alignment:
Q  50 catcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||  || ||| ||| |||||||||    
T  3324 catcgtccattcccctaatcttaacttcgttctaatttaaagttattatctcaccttatcattaaattagacttcaacaactttcc 3239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 20026443 - 20026528
Alignment:
Q  50 catcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||| ||| |||||||||    
T  20026443 catcgtccattcccctaatcttaacttcattctaatttagagttattatctcaccctatcattaatttcgacttcaacaactttcc 20026528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 13477312 - 13477203
Alignment:
Q  56 ccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc-aactaaaacttcattatat 154  Q
    ||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||| ||| ||| ||| |||||||||  ||||| ||| |||||||     
T  13477312 ccattcccctaatcttaacttcgttctaaattaaacttattatctcaccttatcattaatttggacttcagcaactttcctcactaagactacattataa 13477213  T
Q  155 tttagggttt 164  Q
    |||| |||||    
T  13477212 tttaaggttt 13477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 37945501 - 37945374
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| |||||||||||||||| |  | | |||||  ||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||  || |||    
T  37945501 tctcacattcatcgtcatctata-cgccaatcattctcctaatcttaacttgattctaaattaaagttattatctcaccttttcattactttcaacttca 37945403  T
Q  126 tcaactttcc-aactaaaacttcattata 153  Q
     |||||||||  ||||| |||||||||||    
T  37945402 gcaactttcctcactaagacttcattata 37945374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 4531413 - 4531365
Alignment:
Q  64 ctaatcttaacttcattctaatttaaagttattatctcaccttatcatt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4531413 ctaatcttaacttcgttctaatttaaagttattatctcaccttatcatt 4531365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 15866979 - 15866879
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatctcac 103  Q
    |||||||||| || |||||  |||||||||| |||||||||||  ||||| || | || ||||||||||||||| | ||| |||||||||||||||| ||    
T  15866979 actttatatcttattacttgttctcacgttcgtcgtcatctat-gcatcgtccgtccccctaatcttaacttcaatttaattttaaagttattatctaac 15866881  T
Q  104 ct 105  Q
    ||    
T  15866880 ct 15866879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 2889215 - 2889131
Alignment:
Q  94 attatctcaccttatcattacttttgacgtcatcaactttcca-actaaaacttcattatattttagggttttaatttctcgtta 177  Q
    ||||||||  |||||||||| ||||||| ||| ||||||| |  ||||||||||||||  |||||||||||||| | ||||||||    
T  2889215 attatctcgacttatcattatttttgacatcaacaacttttctcactaaaacttcatttcattttagggttttattctctcgtta 2889131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 8403474 - 8403366
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| |||||||||||| ||||||| ||||  ||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| |||    
T  8403474 tctcacattcgtcgtcatctata-catcgactattctcctaatcttaacttaatcctaatttaaagttattatctcactttatcagtacttttgacttca 8403376  T
Q  126 tcaactttcc 135  Q
      ||||||||    
T  8403375 gaaactttcc 8403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 9191498 - 9191560
Alignment:
Q  49 acatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcat 111  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  9191498 acatcgaccattctcctaatcttaacttcattctaatttaaaattataatctcaccttatcat 9191560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 7682247 - 7682176
Alignment:
Q  64 ctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    |||||||||||| | |||||||||||||||| ||| | |||||||||||| ||||||| ||| |||||||||    
T  7682247 ctaatcttaactccgttctaatttaaagttactatgttaccttatcattaattttgacttcaacaactttcc 7682176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 14970565 - 14970620
Alignment:
Q  80 tctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||||||| ||||||||||||||| |||||||| ||||||| ||| |||||||||    
T  14970565 tctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcc 14970620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 10906370 - 10906324
Alignment:
Q  68 tcttaacttcattctaatttaaagttattatctcaccttatcattac 114  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||    
T  10906370 tcttaacttgattctaatttaaagttatcatatcaccttatcattac 10906324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 19546996 - 19546919
Alignment:
Q  55 accattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactt 132  Q
    |||||||  ||||||| ||| || ||||||||||||||||||||| ||| | ||||||||||| ||| |||| |||||    
T  19546996 accattctcctaatctgaacctcgttctaatttaaagttattatcgcacttaatcattactttcgacttcataaactt 19546919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 24786616 - 24786701
Alignment:
Q  50 catcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||| ||| ||| |||||    
T  24786616 catcgcccattcccctaatcttaacttcgttctaatttatagttattatctcaccttatcattaatttcgacttcaacaagtttcc 24786701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 44586108 - 44586051
Alignment:
Q  56 ccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcatta 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44586108 ccattcccctaatcttaacttcattctaatttaaagttattatctcacctcatcatta 44586051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 23656108 - 23656030
Alignment:
Q  56 ccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttc 134  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| | | ||| ||| ||||||||    
T  23656108 ccattcccctaatcttaacttcattctaatttaaagtaattatctcaccttattattaatctcgacttcaacaactttc 23656030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 32251846 - 32251782
Alignment:
Q  49 acatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcatta 113  Q
    ||||||| ||||| |||||||||| || |||||||||||||| |||| ||| |||||||||||||    
T  32251846 acatcgatcattcttctaatcttatctacattctaatttaaaattatcatcccaccttatcatta 32251782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29637437 - 29637496
Alignment:
Q  1 aacaactttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccatt 60  Q
    |||||||||||||  || |||||| |||||||||||||||||| | ||||||| ||||||    
T  29637437 aacaactttatattatattacttcatctcacgttcatcgtcatttgtaacatcaaccatt 29637496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 29637503 - 29637590
Alignment:
Q  97 atctcaccttatcattacttttgacgtcatcaactttc-caactaaaacttcattatattttagggttttaatttctcgttaccggtc 183  Q
    ||||||| |||||||||||||  ||||||  ||||||| | ||||||| ||||||| | ||||||||| |||| |||| |||||||||    
T  29637503 atctcacattatcattactttcaacgtcagaaactttctccactaaaatttcattacactttagggttctaatatctcattaccggtc 29637590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 1566758 - 1566683
Alignment:
Q  37 tcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcatta 113  Q
    |||||||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  1566758 tcgtcatctatg-catcgtccattcctctaatcttaacttcgttctaatttaaagttattatcccaccttaccatta 1566683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 13881958 - 13881859
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatctcac 103  Q
    |||||||||| || |||||  |||||||||| ||||||||||| |||||| ||  ||| ||||||||||||||||| ||| ||||| |||||||||| ||    
T  13881958 actttatatcttattacttgttctcacgttcgtcgtcatctat-acatcgtcc-gtcccctaatcttaacttcattttaattttaatgttattatctaac 13881861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 51626695 - 51626595
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattct-aatttaaagttattatctcac 103  Q
    |||||||||| || |||||  |||||||||| ||||||||||| |||||| || |  | |||||| |||||||||| | |||||||||||||||||| ||    
T  51626695 actttatatcttattacttgttctcacgttcgtcgtcatctat-acatcgtccgtctccctaatcataacttcattttaaatttaaagttattatctaac 51626597  T
Q  104 ct 105  Q
    ||    
T  51626596 ct 51626595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 29294323 - 29294408
Alignment:
Q  50 catcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc 135  Q
    ||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||||||| ||||  |||||| ||| |||||||||    
T  29294323 catcgtccattcccctactcttaacttcgtcctaatttaaagttattatctcaccttataattaaatttgacttcagcaactttcc 29294408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 13047 - 13131
Alignment:
Q  70 ttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactttcc-aactaaaacttcattata 153  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||||  || ||| |||||||||  |||||||||||||||||    
T  13047 ttaacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattata 13131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 14657 - 14751
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgac 121  Q
    |||||| ||| |||||||||||| |||||||  |||  ||||||||||||| || |||||||||| |||||||||||| |||||| ||||||||||    
T  14657 tctcacattcgtcgtcatctata-catcgacttttctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatacttttgac 14751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 1701 - 1809
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtca 125  Q
    |||||| ||| | |||||||||| |||||||||||   ||||  ||||| |||||||| |||||||||||||||||| |||||| ||||||| ||| |||    
T  1701 tctcacattcgtagtcatctata-catcgaccattatcctaactttaacctcattctattttaaagttattatctcatcttatcgttactttcgacttca 1799  T
Q  126 tcaactttcc 135  Q
     |||||||||    
T  1800 gcaactttcc 1809  T

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Target: scaffold0118 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 10531 - 10640
Alignment:
Q  26 tctcacgttcatcgtcatctataacatcgaccattcctctaatcttaac-ttcattctaatttaaagttattatctcaccttatcattacttttgacgtc 124  Q
    |||||| ||| |||||||||||| ||||||| ||||  ||||||||||| || || ||||||||||| ||||||||||| ||| |||||||||| || ||    
T  10531 tctcacattcgtcgtcatctata-catcgactattctcctaatcttaaccttaatcctaatttaaagctattatctcactttaccattacttttaacttc 10629  T
Q  125 atcaactttcc 135  Q
    |  ||||||||    
T  10630 agaaactttcc 10640  T

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Target: scaffold0319 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 13271 - 13172
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatctcac 103  Q
    |||||||||| ||||||||  ||||| |||| ||||||||||| |||||| || || | ||||||||||||||||| ||| |||||||||||||||| ||    
T  13271 actttatatcttagtacttgttctcatgttcgtcgtcatctat-acatcgtccgtttc-ctaatcttaacttcattttaattttaaagttattatctaac 13174  T

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Target: scaffold0048 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 87259 - 87201
Alignment:
Q  56 ccattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattac 114  Q
    |||||| |||| ||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  87259 ccattcttctactcttaacttgattctaatttaaagttatcatctcatattatcattac 87201  T

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Target: scaffold0218 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 14791 - 14890
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatctcac 103  Q
    |||||||||| || || ||  |||||||||| ||||||||||| |||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| ||    
T  14791 actttatatcttattagttgttctcacgttcgtcgtcatctat-acatcgtcc-gtcccctaatcttaacttcattttaattttaaagttattatctaac 14888  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 4358 - 4281
Alignment:
Q  55 accattcctctaatcttaacttcattctaatttaaagttattatctcaccttatcattacttttgacgtcatcaactt 132  Q
    |||||||  ||||| | ||| |||||||||||||||||||||||| ||| | ||||||||||| ||| |||| |||||    
T  4358 accattctcctaatttgaacctcattctaatttaaagttattatcgcacttgatcattactttcgacttcataaactt 4281  T

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Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 29472 - 29571
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatctcac 103  Q
    |||||||||| || |||||  || ||||||| ||||||||||| |||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| ||    
T  29472 actttatatcttattacttgttcacacgttcgtcgtcatctat-acatcgtcc-gtcccctaatcttaacttcattttaattttaaagttattatctaac 29569  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 131196 - 131290
Alignment:
Q  5 actttatatcgtagtacttcctctcacgttcatcgtcatctataacatcgaccattcctctaatcttaacttcattctaa-tttaaagttattatct 100  Q
    |||||||||| || |||||  |||||||||| ||||||| |||| ||||| || | || ||||||||||||||||| ||| ||||||||||||||||    
T  131196 actttatatcttattacttgttctcacgttcgtcgtcatttata-catcgtccgtccc-ctaatcttaacttcattttaattttaaagttattatct 131290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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