View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_high_24 (Length: 228)

Name: NF0653_high_24
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_high_24
NF0653_high_24
[»] chr4 (3 HSPs)
chr4 (126-228)||(14660222-14660324)
chr4 (1-77)||(14660373-14660449)
chr4 (4-77)||(19641217-19641290)
[»] chr2 (11 HSPs)
chr2 (127-228)||(39756052-39756153)
chr2 (1-77)||(39755926-39756002)
chr2 (4-77)||(27425626-27425699)
chr2 (4-77)||(27440672-27440745)
chr2 (123-228)||(27425477-27425580)
chr2 (123-228)||(27440523-27440626)
chr2 (12-77)||(19800007-19800071)
chr2 (21-77)||(17258685-17258740)
chr2 (22-77)||(21694605-21694659)
chr2 (22-77)||(21709335-21709389)
chr2 (21-77)||(32238188-32238243)
[»] chr1 (9 HSPs)
chr1 (123-228)||(21504259-21504364)
chr1 (4-77)||(18287550-18287623)
chr1 (4-77)||(18291931-18292004)
chr1 (1-77)||(21504138-21504215)
chr1 (123-228)||(18596848-18596951)
chr1 (4-77)||(18596730-18596802)
chr1 (12-77)||(16199339-16199403)
chr1 (12-77)||(16214354-16214418)
chr1 (21-77)||(21888639-21888694)
[»] chr7 (6 HSPs)
chr7 (123-228)||(4184935-4185039)
chr7 (4-77)||(4184816-4184889)
chr7 (12-77)||(30243147-30243211)
chr7 (22-77)||(16035284-16035338)
chr7 (28-77)||(7367682-7367730)
chr7 (22-77)||(16050059-16050113)
[»] chr6 (1 HSPs)
chr6 (12-77)||(24375065-24375129)
[»] chr5 (4 HSPs)
chr5 (22-76)||(25193804-25193857)
chr5 (22-76)||(25209191-25209244)
chr5 (22-76)||(25273347-25273400)
chr5 (22-77)||(3942256-3942310)
[»] chr3 (2 HSPs)
chr3 (21-77)||(4882543-4882598)
chr3 (22-77)||(19926718-19926772)
[»] scaffold0347 (1 HSPs)
scaffold0347 (26-77)||(17980-18030)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 14660324 - 14660222
Alignment:
Q  126 aatcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttcctt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14660324 aatcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttcctt 14660225  T
Q  226 tcc 228  Q
    |||    
T  14660224 tcc 14660222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14660449 - 14660373
Alignment:
Q  1 tcatcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  14660449 tcatcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccattaggtgacggacttaagcacgatca 14660373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 19641290 - 19641217
Alignment:
Q  4 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  19641290 tcatcatcgaatcagcttcttcgcaatacaagtgcgaatccatcactattacgtgacggactcaagcacgatca 19641217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 39756052 - 39756153
Alignment:
Q  127 atcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttccttt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39756052 atcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttccttt 39756151  T
Q  227 cc 228  Q
    ||    
T  39756152 cc 39756153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39755926 - 39756002
Alignment:
Q  1 tcatcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  39755926 tcatcatcaccgaatcagcctcttcgcaatacaagcgcgaatccatcaccattaggtgacagactcaagcacgatca 39756002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 27425699 - 27425626
Alignment:
Q  4 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  27425699 tcatcaccgaatcagcttcttcacaatacaagtgcgaatccatcactattaggtgacggactcaagcacgatca 27425626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 27440745 - 27440672
Alignment:
Q  4 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  27440745 tcatcaccgaatcagcttcttcacaatacaagtgcgaatccatcactattaggtgacggactcaagcacgatca 27440672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 27425580 - 27425477
Alignment:
Q  123 ccgaatcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttc 222  Q
    ||||| ||||| ||||||| ||| ||||||  || || ||||||||||||||||||||||||||||||||||||||||  |||||  || ||||||||||    
T  27425580 ccgaaccggaatcgtgaaatacgaagagcgttcgtgaatccagaccgtaaaacagaggcatcaacagcgaagaggtaactcttcg--tttttcacttttc 27425483  T
Q  223 ctttcc 228  Q
    ||||||    
T  27425482 ctttcc 27425477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 27440626 - 27440523
Alignment:
Q  123 ccgaatcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttc 222  Q
    ||||| ||||| ||||||| ||| ||||||  || || ||||||||||||||||||||||||||||||||||||||||  |||||  || ||||||||||    
T  27440626 ccgaaccggaatcgtgaaatacgaagagcgttcgtgaatccagaccgtaaaacagaggcatcaacagcgaagaggtaactcttcg--tttttcacttttc 27440529  T
Q  223 ctttcc 228  Q
    ||||||    
T  27440528 ctttcc 27440523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 19800007 - 19800071
Alignment:
Q  12 gaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19800007 gaatcaacttcttcacaatacaagtgcgaatccatcaccgtt-ggtgacggactcaagcacgatca 19800071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 17258685 - 17258740
Alignment:
Q  21 tcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  17258685 tcttcgcaatacaagtgcgaatccatcactgtt-ggtgacggactcaagcacgatca 17258740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 21694659 - 21694605
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  21694659 cttcgcaatacaagtgcgaatccatcactgtt-ggtgacggactcaagcacgatca 21694605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 21709389 - 21709335
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  21709389 cttcgcaatacaagtgcgaatccatcactgtt-ggtgacggactcaagcacgatca 21709335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 32238243 - 32238188
Alignment:
Q  21 tcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  32238243 tcttcacaatacgagtgcgaatccatcactgtta-gtgacggactcaagcacgatca 32238188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 21504259 - 21504364
Alignment:
Q  123 ccgaatcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttc 222  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21504259 ccgaatcggaaccgtgaaacacgcagagcgcgcgcaactccagaccgtaaaacagaggcatcaacggcgaagaggtaatccttcgctttcttcacttttc 21504358  T
Q  223 ctttcc 228  Q
    ||||||    
T  21504359 ctttcc 21504364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 18287550 - 18287623
Alignment:
Q  4 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  18287550 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcactattaggtgacggactcaagcacgatca 18287623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 18291931 - 18292004
Alignment:
Q  4 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  18291931 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcactattaggtgacggactcaagcacgatca 18292004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21504138 - 21504215
Alignment:
Q  1 tcatcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttagg-tgacggactcaagcacgatca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  21504138 tcatcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccattaggttgacggactcaagcacgatca 21504215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 18596848 - 18596951
Alignment:
Q  123 ccgaatcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttc 222  Q
    ||||| ||||| ||||||| ||| ||||||  || || || |||||||||||||||||||||||||||||||||||||  |||||  || ||||||||||    
T  18596848 ccgaaccggaatcgtgaaatacgaagagcgttcgtgaatctagaccgtaaaacagaggcatcaacagcgaagaggtaactcttcg--tttttcacttttc 18596945  T
Q  223 ctttcc 228  Q
    ||||||    
T  18596946 ctttcc 18596951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 18596730 - 18596802
Alignment:
Q  4 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||  || |||||||||||||||||||||||    
T  18596730 tcatcatcgaatcagcttcttcacaatacaagtgcgaatccatcactatt-ggtgacggactcaagcacgatca 18596802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 16199403 - 16199339
Alignment:
Q  12 gaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||| || ||||| |||||||||||||||||||||||  || |||||||||||||||||||||||    
T  16199403 gaatcggcttcttcacaatacaagtgcgaatccatcactatt-ggtgacggactcaagcacgatca 16199339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 16214418 - 16214354
Alignment:
Q  12 gaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||| || ||||| |||||||||||||||||||||||  || |||||||||||||||||||||||    
T  16214418 gaatcggcttcttcacaatacaagtgcgaatccatcactatt-ggtgacggactcaagcacgatca 16214354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 21888694 - 21888639
Alignment:
Q  21 tcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  21888694 tcttcacaatacgagtgcgaatccatcactgtta-gtgacggactcaagcacgatca 21888639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 4184935 - 4185039
Alignment:
Q  123 ccgaatcggaaccgtgaaacacgcagagcgcgcgcgactccagaccgtaaaacagaggcatcaacagcgaagaggtaatccttcgctttcttcacttttc 222  Q
    ||||||||||| ||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  4184935 ccgaatcggaatcgtgaaatacgaagagcgtgcgcgaatccagaccgtaaaacagaggcatcaacagcgaagaggtaacccttcg-ttttttcacttttc 4185033  T
Q  223 ctttcc 228  Q
    ||||||    
T  4185034 ctttcc 4185039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 4184816 - 4184889
Alignment:
Q  4 tcatcaccgaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  4184816 tcatcaccgattcagcttcttcgcaatacaagtgcgaatccatcactattaggtgacggactcaagcacgatca 4184889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 30243211 - 30243147
Alignment:
Q  12 gaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  30243211 gaatcagcttcttcgcaatacaagtgcgaatccatcactgtt-ggtgacgaactcaagcacgatca 30243147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 16035284 - 16035338
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  16035284 cttcgcaatacaagtgcgaatccatcactgtt-ggtgacggactcaagcacgatca 16035338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 7367682 - 7367730
Alignment:
Q  28 aatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  7367682 aatacaagtgggaatccattaccgtt-ggtgacggactcaagcacgatca 7367730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 16050059 - 16050113
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||| ||||||||| | ||| |||||| ||||||||||||||||    
T  16050059 cttcgcaatacaagtgtgaatccatctctgtt-ggtgacagactcaagcacgatca 16050113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 24375065 - 24375129
Alignment:
Q  12 gaatcagcctcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||| || ||||| |||||||||||||||||||||||  || |||||||||||||||||||||||    
T  24375065 gaatcggcttcttcacaatacaagtgcgaatccatcactatt-ggtgacggactcaagcacgatca 24375129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 25193804 - 25193857
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatc 76  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||    
T  25193804 cttcgcaatacaagtgcgaatccaccactgtt-ggtgagggactcaagcacgatc 25193857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 25209191 - 25209244
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatc 76  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||    
T  25209191 cttcgcaatacaagtgcgaatccaccactgtt-ggtgagggactcaagcacgatc 25209244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 25273347 - 25273400
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatc 76  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||    
T  25273347 cttcgcaatacaagtgcgaatccaccactgtt-ggtgagggactcaagcacgatc 25273400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 3942256 - 3942310
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||| |||||| |||||||||||||||| |||| | ||||||||||||||||||||    
T  3942256 cttcacaatacgagtgcgaatccatcactgtta-gcgacggactcaagcacgatca 3942310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 4882543 - 4882598
Alignment:
Q  21 tcttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    ||||| |||||| |||||||||||||||| |||| | ||||||||||||||||||||    
T  4882543 tcttcacaatacgagtgcgaatccatcactgtta-gcgacggactcaagcacgatca 4882598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 19926718 - 19926772
Alignment:
Q  22 cttcgcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||| |||||| |||||||||||||||| |||| | ||||||||||||||||||||    
T  19926718 cttcacaatacgagtgcgaatccatcactgtta-gcgacggactcaagcacgatca 19926772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 18030 - 17980
Alignment:
Q  26 gcaatacaagtgcgaatccatcaccgttaggtgacggactcaagcacgatca 77  Q
    |||||||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  18030 gcaatacaagtgcgaatcaatcactgtt-ggtgactgactcaagcacgatca 17980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 603 times since January 2019
Visitors: 4091