View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_high_9 (Length: 481)

Name: NF0653_high_9
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_high_9
NF0653_high_9
[»] chr2 (4 HSPs)
chr2 (190-466)||(42367266-42367544)
chr2 (59-152)||(42367583-42367676)
chr2 (416-449)||(1410276-1410309)
chr2 (217-277)||(1410382-1410445)
[»] chr1 (2 HSPs)
chr1 (190-324)||(43890773-43890909)
chr1 (61-133)||(43890632-43890705)
[»] chr5 (3 HSPs)
chr5 (419-466)||(12830615-12830662)
chr5 (419-466)||(12862595-12862642)
chr5 (419-466)||(22819195-22819242)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 190 - 466
Target Start/End: Complemental strand, 42367544 - 42367266
Alignment:
Q  190 taacaaggtgtgaatgttatcgtaaggtgaagggtttaggataatgtggtcaaagaaggaagccaagggaagtggttggaaggttcctcctacaatgagg 289  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42367544 taacagggtgtgaatgttattgtaaggtgaagggtttaggataatgtggtcaaagaaggaagccaagggaagtggttggaaggttcctcctacaatgagg 42367445  T
Q  290 aagaatgatttagtacctttcagcgaagtagtgaccactaacttcaacgca-nnnnnnngggtttcgtgagaagttattgatgttgttttaatgaattga 388  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||        ||||||  ||||||||||||||||||||||||| |||||||    
T  42367444 aagaatgatttagtacctttgagtgaagtagtgaccagtaacttcaacgcattttttttgggttttatgagaagttattgatgttgttttaacgaattga 42367345  T
Q  389 gttattcaattgaattaaactatgttg-tttgaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa 466  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42367344 gttattcaattgaattaaactatgttgttttgaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa 42367266  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 42367676 - 42367583
Alignment:
Q  59 gcttttgaataaataagctatttaacataaaacccacaagaaaataataggatagaaccttgggtacgaggattcaggattcgattgtgggaac 152  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42367676 gcttttgaataaataagcgatttaacataaaacccacaacaaaataataggatagaaccttgggtacgaggattcaggattcggttgtgggaac 42367583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 449
Target Start/End: Complemental strand, 1410309 - 1410276
Alignment:
Q  416 tttgaagaagatgaaaaatttaattgtattgttt 449  Q
    ||||||||||||||||||||||||||||||||||    
T  1410309 tttgaagaagatgaaaaatttaattgtattgttt 1410276  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 1410445 - 1410382
Alignment:
Q  217 tgaagggtttaggataatgt---ggtcaaagaaggaagccaagggaagtggttggaaggttcct 277  Q
    |||| ||||||||||| |||   |||||||||||||| | |||||||||| |||||||||||||    
T  1410445 tgaaaggtttaggatagtgttacggtcaaagaaggaaactaagggaagtgattggaaggttcct 1410382  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 43890773 - 43890909
Alignment:
Q  190 taacaaggtgtgaatgttatcgtaaggtgaagggtttaggataatgt---ggtcaaagaaggaagccaagggaagtggttggaaggttcctcctacaatg 286  Q
    ||||| ||| |||| ||||| |||||||||| | ||| ||||| |||   |||||||||||||||| || |||||| |||||||| ||||| | | ||||    
T  43890773 taacagggtatgaaggttattgtaaggtgaaagatttgggatagtgttatggtcaaagaaggaagctaaaggaagtagttggaagtttcctacga-aatg 43890871  T
Q  287 aggaagaatgatttagtacctttcagcgaagtagtgac 324  Q
    ||||||||||||| ||| ||||| || || ||||||||    
T  43890872 aggaagaatgattcagtgcctttgagtgaggtagtgac 43890909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 43890632 - 43890705
Alignment:
Q  61 ttttgaataaataagctatttaacataaaacccacaagaaaataataggatagaacct-tgggtacgaggattc 133  Q
    |||||||||||||||   | ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  43890632 ttttgaataaataagtggtgtaacaaaaaacccacaacaaaataataggatcgaacctctgggtacgaggattc 43890705  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 12830615 - 12830662
Alignment:
Q  419 gaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa 466  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  12830615 gaagatgatgaaaaatttaattttattgttttgaagatgataaacaaa 12830662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 12862595 - 12862642
Alignment:
Q  419 gaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa 466  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  12862595 gaagatgatgaaaaatttaattttattgttttgaagatgataaacaaa 12862642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 22819195 - 22819242
Alignment:
Q  419 gaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa 466  Q
    ||||| |||||| ||||||||| |||||||||||| ||||||||||||    
T  22819195 gaagatgatgaagaatttaattttattgttttgaagatgataaacaaa 22819242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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