View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0653_low_1 (Length: 674)
Name: NF0653_low_1
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 294
Target Start/End: Original strand, 6307414 - 6307689
Alignment:
| Q |
24 |
tcatcaaaagcaaatagtgcctaaccttattgtgtgatcaggaaacaaccctacgatacatttatctttgaatataattacctaccaattgttccagatt |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6307414 |
tcatcaaaagtaaatagtgcctaaccttattgtgtgatcaggaaacaaccctacgatacatttatctttgaatataattacccaccaattgttccagatt |
6307513 |
T |
|
| Q |
124 |
aatattcatttctacaatgtcaattagattcata-----cctatcaggtattcaaaataaaaatttccatcctcttatttgcatgcattctagggtttct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307514 |
aatattcatttctacaatgtcaattagattcataccatacctatcaggtattcaaaataaaaatttccatcctcttatttgcatgcattctagggtttct |
6307613 |
T |
|
| Q |
219 |
tcttctaatattacacctctttattatttgattaaatcaaaatatataacataatcattaaaatttgccaaaaccg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6307614 |
tcttctaatattacacctctttattatttgattaaatcaaaatatataacataatgattaaaatttgccaaaaccg |
6307689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 356 - 623
Target Start/End: Original strand, 6307751 - 6308024
Alignment:
| Q |
356 |
caaaatatctaaacatagcccaggtcttaaatcagtatcttatcctgtctagtttaattgtcgacatagtttatgatgtcctcgt------gggcacata |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6307751 |
caaaatatctaaacatagcccaggtcttaaatcagtatcttatcctgtctagtttaattgtcgacatagtttatgatgtcctcgtggtcgtgggcacata |
6307850 |
T |
|
| Q |
450 |
tggtgcaaattaggccaaacaagataccagaatgcagaaccataacttttatggtgaatgacatctcaactatctatcacttgtggaattatcacttacg |
549 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6307851 |
tggtgcaaatttggccaaacaagataccagaatgcagaaccataacttttatggtgaatgacatctcaactatctatcacttgtggacttatcacttacg |
6307950 |
T |
|
| Q |
550 |
cttggtatattggcctttataatatgagaagatggttaaagccccaccaagaagtatataagaggaaacatagt |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307951 |
cttggtatattggcctttataatatgagaagatggttaaagccccaccaagaagtatataagaggaaacatagt |
6308024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 453 times since January 2019
Visitors: 4085