View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_11 (Length: 532)
Name: NF0653_low_11
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 48320840 - 48321274
Alignment:
| Q |
1 |
tataagggtgaaagaggtgcaattggcggttaattaccgtttgaaaatgcatgaagtcgtttcagttgggatttttgaaaaaacgtgattatttgatttc |
100 |
Q |
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| T |
48320840 |
tataagggtgaaagaggtgcaattggcggttaattaccgtttgaaaatgcatgaagtcgtttcagttgggatttttgaaaaa-cgtgattatttgatttc |
48320938 |
T |
|
| Q |
101 |
ggcttcactaacaaaaccccgtttcaannnnnnnngacaggtaccaggtttcaaattgaattcgaaaattttcaggcaaataaactattttgtgtgaaaa |
200 |
Q |
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| T |
48320939 |
ggcttcactaacaaaaccacgtttcaattttttttgacaggtaccaggtttcaaattgaattcgaaaattttcaggcaagtaaaccattttgtgtgaaaa |
48321038 |
T |
|
| Q |
201 |
taaaataaaatttagacactaaga-aaaatggtgatattccttttttatcatgtgtttaaataattttcatnnnnnnnntcaatttgtctcgagtaaggt |
299 |
Q |
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| T |
48321039 |
taaaataaaatttagacactaagacaaaatggtgatattccttttttatcatgtgtttaaataattttcattaaaaaaatcgatttgtctcaaat-aggt |
48321137 |
T |
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| Q |
300 |
cttaaatttgtggttcacctaactcaacatgtaaaaatattgtaatcattaaatcgaatgatgtgattggggtttgaacctcgacttctctatttatata |
399 |
Q |
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| T |
48321138 |
ctaaaatttgtggttcacctaactcaactggtaaaaatattgtaattattaaatcgaacgatgtga-tcgggtttgaacctcgacttctctatttatata |
48321236 |
T |
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| Q |
400 |
tgtttctaatagttatggtcatttcatttatctacaac |
437 |
Q |
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| T |
48321237 |
tgtttctaatagttatggtcatttcatttatctacaac |
48321274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 26325005 - 26324948
Alignment:
| Q |
11 |
aaagaggtgcaattggcggttaattaccgtttgaaaa-tgcatgaagtcgtttcagtt |
67 |
Q |
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| T |
26325005 |
aaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtt |
26324948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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