View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0653_low_12 (Length: 524)
Name: NF0653_low_12
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 30 - 485
Target Start/End: Original strand, 48645421 - 48645876
Alignment:
| Q |
30 |
gaaccatccaacatgttcaaaaatgtccaatcaatcgtgctaccattgtcatacgtagtagtagtagatgaagagccaccaatttccgtcaccatattgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48645421 |
gaaccatccaacatgttcaaaaatgtccaatcaatcgtgctacgattgttatacatagtagttgtagatgaagagccaccaatttccgtcaccatattgg |
48645520 |
T |
|
| Q |
130 |
attgaacattactattatttccattattattattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcgaatttgttgtggtgtaag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48645521 |
attgaacattactattatttccattattattattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcgaatttgttgtggtgtaag |
48645620 |
T |
|
| Q |
230 |
tgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
48645621 |
tgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgaccacgaagacaataaagtgcagcatcaaat |
48645720 |
T |
|
| Q |
330 |
gctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctca |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48645721 |
gctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctca |
48645820 |
T |
|
| Q |
430 |
atctcacacctttgtacttcttgttcttattatcattatttccacttgaagtagaa |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
48645821 |
atctcacacctttgtacttcttgttcttattatcattatttccacttgaggtagaa |
48645876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 30 - 485
Target Start/End: Original strand, 48653834 - 48654292
Alignment:
| Q |
30 |
gaaccatccaacatgttcaaaaatgtccaatcaatcgtgctaccattgtcatacgtagtagtagtagatgaagagccaccaatttccgtcaccatattgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
48653834 |
gaaccatccaacatgttcaaaaatgtccaatcaatcgtgctaccattgttatacatagtagttgtagatgaagagccaccaatttccgtcaccatattgg |
48653933 |
T |
|
| Q |
130 |
attgaacattactattatttccattattattattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcgaatttgttgtggtgtaag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48653934 |
attgaacattactattatttccattattattattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcgaatttgttgtggtgtaag |
48654033 |
T |
|
| Q |
230 |
tgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
48654034 |
cgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgaccacgaagacaataaagtgcagcatcaaat |
48654133 |
T |
|
| Q |
330 |
gctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctca |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48654134 |
gctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctca |
48654233 |
T |
|
| Q |
430 |
atctcacacctttgtacttcttgt---tcttattatcattatttccacttgaagtagaa |
485 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
48654234 |
atctcacacctttgtacttcttctcagtcttattatcattatttccacttgaagtagaa |
48654292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 8145999 - 8146150
Alignment:
| Q |
122 |
catattggattgaacattac---tattatttccattattat------tattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcga |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
8145999 |
catattggattgaacattaccattattatttccattattattgttattattatcaataattggtgggtttttgttagcaaaatttgcagcaacctctcga |
8146098 |
T |
|
| Q |
213 |
atttgttgtggtgtaagtgaattgttagaaactgcattgatatccaaattga |
264 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8146099 |
atttgttgtggtataagtgaattgttagaaactgcattgatatccaaattga |
8146150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 30545201 - 30545273
Alignment:
| Q |
150 |
ccattattattattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcgaatttgttgtg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30545201 |
ccattattattattatcaataattggtgggtttttgttagcaaaatttgcagcaacctcttgaatttgttgtg |
30545273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 44154554 - 44154487
Alignment:
| Q |
155 |
attattattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcgaatttgttgtg |
222 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
44154554 |
attattattatcaataattggtgggtttttgttagcaaaatttgcagcaacctcttgaatttgttgtg |
44154487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 48569882 - 48569990
Alignment:
| Q |
156 |
ttattattatcaataattggtggatttttgttagcaaaatttgcagcaacctctcgaatttgttgtggtgtaagtgaattgttagaaactgcattgatat |
255 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
48569882 |
ttattattatcaataatttgtgggtttttgttagcaaaatttacagcaacctctcgaatttgttgtggtataagtgaattgttagaaactgcattgatat |
48569981 |
T |
|
| Q |
256 |
ccaaattga |
264 |
Q |
| |
|
||||||||| |
|
|
| T |
48569982 |
ccaaattga |
48569990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 266 - 428
Target Start/End: Complemental strand, 3573912 - 3573750
Alignment:
| Q |
266 |
aggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatcct |
365 |
Q |
| |
|
|||||||| | ||||||||||| |||||||| |||| || |||||||| || || ||||||||||| |||||||||| || || |||||||||||| |
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| T |
3573912 |
aggtgtattagggaaattgaaacttgcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcct |
3573813 |
T |
|
| Q |
366 |
aaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
428 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
3573812 |
aaccatattctctcacgactatttggaagcctaatttcagatacccattttccccattttctc |
3573750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 264 - 428
Target Start/End: Complemental strand, 3551496 - 3551332
Alignment:
| Q |
264 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
363 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||| |||| || ||||||||||| || |||||||||||| | ||||||||||| || |||||||||| |
|
|
| T |
3551496 |
agaggtgtgttagggaaattgaaacttgcatgaggaccacgtagacaataaagggctgcatcaaatgctcttgctgctttctcttgtgtgtcatatgatc |
3551397 |
T |
|
| Q |
364 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
428 |
Q |
| |
|
||||||||||||| || | ||||||||| ||||| || |||||||||||||||||||| |||||| |
|
|
| T |
3551396 |
ctaaccatattctctccctactatttggaagcctaatctcagatacccattttccccaatttctc |
3551332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 264 - 428
Target Start/End: Complemental strand, 3589206 - 3589042
Alignment:
| Q |
264 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
363 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||| |||| || |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
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|
| T |
3589206 |
agaggtgtgttagggaaattgaaacttgcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
3589107 |
T |
|
| Q |
364 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
428 |
Q |
| |
|
||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
3589106 |
ctaaccatattctctccctactatttggaagcctaatttcagatacccattttccccattttctc |
3589042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 264 - 451
Target Start/End: Complemental strand, 3562670 - 3562483
Alignment:
| Q |
264 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
363 |
Q |
| |
|
|||||||| | | ||||||||||| | |||||| |||| || |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
|
|
| T |
3562670 |
agaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
3562571 |
T |
|
| Q |
364 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctcaatctcacacctttgtacttctt |
451 |
Q |
| |
|
||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||| |||| |
|
|
| T |
3562570 |
ctaaccatattctctccctactatttggaagcctaatttcagatacccattttccccattttctcttcctcacccctttgtacatctt |
3562483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 10025353 - 10025200
Alignment:
| Q |
264 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
363 |
Q |
| |
|
|||||||||| | ||||||||||| | |||||| |||| || |||||||| || || |||||||||||| |||||||||| || || |||| ||||| |
|
|
| T |
10025353 |
agaggtgtattagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatc |
10025254 |
T |
|
| Q |
364 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttc |
417 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
10025253 |
ctaaccatattctctcacgactatttggaagcctaatttcagatacccattttc |
10025200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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