View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_14 (Length: 482)
Name: NF0653_low_14
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 191 - 467
Target Start/End: Complemental strand, 42367544 - 42367266
Alignment:
| Q |
191 |
taacaaggtgtgaatgttatcgtaaggtgaagggtttaggataatgtggtcaaagaaggaagccaagggaagtggttggaaggttcctcctacaatgagg |
290 |
Q |
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| T |
42367544 |
taacagggtgtgaatgttattgtaaggtgaagggtttaggataatgtggtcaaagaaggaagccaagggaagtggttggaaggttcctcctacaatgagg |
42367445 |
T |
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| Q |
291 |
aagaatgatttagtacctttcagcgaagtagtgaccactaacttcaacgca-nnnnnnngggtttcgtgagaagttattgatgttgttttaatgaattga |
389 |
Q |
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| T |
42367444 |
aagaatgatttagtacctttgagtgaagtagtgaccagtaacttcaacgcattttttttgggttttatgagaagttattgatgttgttttaacgaattga |
42367345 |
T |
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| Q |
390 |
gttattcaattgaattaaactatgttg-tttgaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa |
467 |
Q |
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| T |
42367344 |
gttattcaattgaattaaactatgttgttttgaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa |
42367266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 42367676 - 42367583
Alignment:
| Q |
59 |
gcttttgaataaataagctatttaacataaaacccacaagaaaataataggatagaaccttgggtacgaggattcaggattcgattgtgggaac |
152 |
Q |
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| T |
42367676 |
gcttttgaataaataagcgatttaacataaaacccacaacaaaataataggatagaaccttgggtacgaggattcaggattcggttgtgggaac |
42367583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 1410309 - 1410276
Alignment:
| Q |
417 |
tttgaagaagatgaaaaatttaattgtattgttt |
450 |
Q |
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| T |
1410309 |
tttgaagaagatgaaaaatttaattgtattgttt |
1410276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 1410445 - 1410382
Alignment:
| Q |
218 |
tgaagggtttaggataatgt---ggtcaaagaaggaagccaagggaagtggttggaaggttcct |
278 |
Q |
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| T |
1410445 |
tgaaaggtttaggatagtgttacggtcaaagaaggaaactaagggaagtgattggaaggttcct |
1410382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 43890773 - 43890909
Alignment:
| Q |
191 |
taacaaggtgtgaatgttatcgtaaggtgaagggtttaggataatgt---ggtcaaagaaggaagccaagggaagtggttggaaggttcctcctacaatg |
287 |
Q |
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||||| ||| |||| ||||| |||||||||| | ||| ||||| ||| |||||||||||||||| || |||||| |||||||| ||||| | | |||| |
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| T |
43890773 |
taacagggtatgaaggttattgtaaggtgaaagatttgggatagtgttatggtcaaagaaggaagctaaaggaagtagttggaagtttcctacga-aatg |
43890871 |
T |
|
| Q |
288 |
aggaagaatgatttagtacctttcagcgaagtagtgac |
325 |
Q |
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| T |
43890872 |
aggaagaatgattcagtgcctttgagtgaggtagtgac |
43890909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 43890632 - 43890705
Alignment:
| Q |
61 |
ttttgaataaataagctatttaacataaaacccacaagaaaataataggatagaacct-tgggtacgaggattc |
133 |
Q |
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||||||||||||||| | ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
43890632 |
ttttgaataaataagtggtgtaacaaaaaacccacaacaaaataataggatcgaacctctgggtacgaggattc |
43890705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 12830615 - 12830662
Alignment:
| Q |
420 |
gaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa |
467 |
Q |
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| T |
12830615 |
gaagatgatgaaaaatttaattttattgttttgaagatgataaacaaa |
12830662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 12862595 - 12862642
Alignment:
| Q |
420 |
gaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa |
467 |
Q |
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| T |
12862595 |
gaagatgatgaaaaatttaattttattgttttgaagatgataaacaaa |
12862642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 22819195 - 22819242
Alignment:
| Q |
420 |
gaagaagatgaaaaatttaattgtattgttttgaaaatgataaacaaa |
467 |
Q |
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| T |
22819195 |
gaagatgatgaagaatttaattttattgttttgaagatgataaacaaa |
22819242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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