View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_18 (Length: 401)
Name: NF0653_low_18
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 54 - 379
Target Start/End: Original strand, 41955454 - 41955774
Alignment:
| Q |
54 |
atcatcattatagtgtagaaatagaaatacacgagttatcaaattaatttctgtatattatcgaagtatttatataaatgctaaataatatactttacac |
153 |
Q |
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| T |
41955454 |
atcatcattatagtgtagaaatagaaatacacgaattatcaaattaatttctgtatattatcgaagtatttatataaatgctacataatatactttacac |
41955553 |
T |
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| Q |
154 |
ttaagaactttacttgaagatgcatgctctcaaccagaaacaaaaatattctcgcccatccaatagtccccactctatttcacatctcattcatcctttc |
253 |
Q |
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| T |
41955554 |
ttaagaactttacttgaagatgcatgctctcaaccagaaacaaaaatattcttgcccatccaatagtccccactctatttca-----cattcatcctttc |
41955648 |
T |
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| Q |
254 |
ccctatttgtgtatgtcttattagccaggttcaccatgcatgggtatattaactcccatcatttttaacccaaaagaaaaccaaataaataaaagcctat |
353 |
Q |
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| T |
41955649 |
ccctatttgtgtatgtcttattagccaggttcaccatgcatgggtatattaactcccatcatttttaacccaaaagaaaaccaaataaataaaagcttat |
41955748 |
T |
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| Q |
354 |
ccattactcacgataatattgatgat |
379 |
Q |
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| T |
41955749 |
ccattactcacgataatattgatgat |
41955774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41955545 - 41955582
Alignment:
| Q |
1 |
actttacacttaagaactttactcgaagatgcatgctc |
38 |
Q |
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| T |
41955545 |
actttacacttaagaactttacttgaagatgcatgctc |
41955582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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