View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_20 (Length: 399)
Name: NF0653_low_20
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 49 - 294
Target Start/End: Original strand, 6849506 - 6849751
Alignment:
| Q |
49 |
aaattgtcgatgtgttctagatcacacaaattgttggtgaactctcgaccacatcacgtttcgattctaaaatcaagacgtataaagttatccaaaagac |
148 |
Q |
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| T |
6849506 |
aaattgtcgatgtgttctagatcacacaaattgttggtgaactctcgaccacatcacgtttcgattctaaaatcaagacttataaagttatccaaaagac |
6849605 |
T |
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| Q |
149 |
acccaaatatcataatccaaacttgtaaaatatcggcaagtttcagaaaccatcaaatttttggtaaaatacttggaaaacattctaagtgatcctttgg |
248 |
Q |
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| T |
6849606 |
acccaaatttcataatccaaacttgtaaaatatcggcaagtttcataaaccatcaaatttttggtaaaatacttgtaaaacattctaaatgatcctttgg |
6849705 |
T |
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| Q |
249 |
agtgatcctctaagatacacaagctaactaacaaactagtttgaat |
294 |
Q |
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| T |
6849706 |
agggatcctctaagatacacaagctaactaacaaactagtttgaat |
6849751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 292 - 399
Target Start/End: Original strand, 6851070 - 6851178
Alignment:
| Q |
292 |
aattatacaaccaatacttcttaattcaaa-ctaacgaaattcaccacccatatttctcttcacaatttttatgaacaggtctgccagttggttttatgt |
390 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
6851070 |
aattatacaaccaatacttcttaatttaaaactaacgaaattcaccacccatatttcgcttcacaatttttatgaacaggtctgccagttggttttacgt |
6851169 |
T |
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| Q |
391 |
aggacaata |
399 |
Q |
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| T |
6851170 |
aggacaata |
6851178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 29355715 - 29355648
Alignment:
| Q |
285 |
tagtttgaattatacaaccaatacttcttaattcaaactaacgaaattcaccacccatatttctcttc |
352 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | || |||||| ||||||||||||| |
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| T |
29355715 |
tagtttgaattatacaaccaatactccttaattcaaactatcaaagttcaccgttcatatttctcttc |
29355648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 17070501 - 17070431
Alignment:
| Q |
285 |
tagtttgaattatacaaccaatact---tcttaattcaaactaacgaaattcaccacccatatttctcttc |
352 |
Q |
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|||||||||||||||||| |||||| |||| |||||||||| | ||||||||||||| ||||||||||| |
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| T |
17070501 |
tagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttc |
17070431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 17577772 - 17577842
Alignment:
| Q |
285 |
tagtttgaattatacaaccaatact---tcttaattcaaactaacgaaattcaccacccatatttctcttc |
352 |
Q |
| |
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|||||||||||||||||| |||||| |||| |||||||||| | ||||||||||||| ||||||||||| |
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| T |
17577772 |
tagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttc |
17577842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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