View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_21 (Length: 395)
Name: NF0653_low_21
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 24 - 356
Target Start/End: Original strand, 6977607 - 6977941
Alignment:
| Q |
24 |
ccttcttcattagattagatgagtgatgtttttgttctatatctttgtcccattgttgatcttttgaaagnnnnnnn-tggttttttgttcaatttttat |
122 |
Q |
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| T |
6977607 |
ccttctttattagattagatgagtgatgtttttgttctatatctttgtcccatttttgatcttttgaaagaaaaaaaatgattttttgttcaatttttat |
6977706 |
T |
|
| Q |
123 |
agcccatttgattgatgctatttcttgttcaatatctttgatccattgtagnnnnnnnnttgttttttactgtgatccatggatatannnnnnnnnatga |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
6977707 |
agcccatttgattgatgctatttcttgttcaatatctttgatccattgtagaaaaaaaattgttttttactgtgatccatggatata-ttttttttatga |
6977805 |
T |
|
| Q |
223 |
tgctaatatagtgata---nnnnnnnnaaacaagtttttatgtggatggtactaaaaagattcaatttttatcaannnnnnnnnnccaaatttgttagtt |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
6977806 |
tgctaatatagtgatatttttttttttaaacaagtttttatgtggatggtactaaaaagattcaatttttat-aattttttttttccaaatttgttagtt |
6977904 |
T |
|
| Q |
320 |
caacactttagctttatgatttcttcatgcgtgtgaa |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6977905 |
caacactttagctttatgatttcttcatgcgtgtgaa |
6977941 |
T |
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