View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_low_22 (Length: 368)

Name: NF0653_low_22
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_low_22
NF0653_low_22
[»] chr1 (6 HSPs)
chr1 (87-321)||(42958043-42958276)
chr1 (152-321)||(18506628-18506797)
chr1 (95-304)||(46352351-46352555)
chr1 (113-318)||(7486767-7486972)
chr1 (113-221)||(15722784-15722893)
chr1 (113-164)||(19193323-19193374)
[»] scaffold0159 (1 HSPs)
scaffold0159 (88-321)||(36329-36562)
[»] chr2 (5 HSPs)
chr2 (88-321)||(5782866-5783099)
chr2 (87-286)||(13363959-13364155)
chr2 (117-304)||(29468120-29468305)
chr2 (87-300)||(25417557-25417768)
chr2 (115-158)||(25546614-25546657)
[»] chr6 (11 HSPs)
chr6 (87-321)||(18767104-18767336)
chr6 (87-321)||(21392708-21392941)
chr6 (87-286)||(20025226-20025424)
chr6 (113-304)||(14463994-14464183)
chr6 (113-298)||(15906468-15906651)
chr6 (113-302)||(31569786-31569974)
chr6 (87-257)||(21683646-21683811)
chr6 (123-257)||(20881416-20881549)
chr6 (113-297)||(18715777-18715958)
chr6 (206-301)||(18785335-18785428)
chr6 (113-235)||(23160240-23160363)
[»] chr8 (5 HSPs)
chr8 (113-304)||(7964315-7964504)
chr8 (113-304)||(8224233-8224422)
chr8 (87-300)||(43974084-43974297)
chr8 (87-281)||(22932518-22932710)
chr8 (134-235)||(16046675-16046777)
[»] chr5 (4 HSPs)
chr5 (113-304)||(42882439-42882628)
chr5 (95-321)||(38925910-38926134)
chr5 (123-257)||(22545234-22545367)
chr5 (153-291)||(32726246-32726383)
[»] chr4 (4 HSPs)
chr4 (87-300)||(43592995-43593211)
chr4 (113-298)||(19111485-19111668)
chr4 (113-171)||(52374763-52374821)
chr4 (113-221)||(50377784-50377893)
[»] scaffold0557 (1 HSPs)
scaffold0557 (113-304)||(6942-7130)
[»] scaffold0041 (1 HSPs)
scaffold0041 (87-304)||(31700-31913)
[»] chr7 (3 HSPs)
chr7 (95-321)||(3568983-3569207)
chr7 (112-302)||(39702519-39702708)
chr7 (113-217)||(1966765-1966870)
[»] chr3 (1 HSPs)
chr3 (113-302)||(6506469-6506655)
[»] scaffold0214 (4 HSPs)
scaffold0214 (87-304)||(22186-22405)
scaffold0214 (145-302)||(1577-1733)
scaffold0214 (113-154)||(28775-28816)
scaffold0214 (113-154)||(16687-16728)
[»] scaffold0054 (1 HSPs)
scaffold0054 (112-299)||(50165-50351)
[»] scaffold0590 (1 HSPs)
scaffold0590 (87-195)||(9481-9588)
[»] scaffold0726 (1 HSPs)
scaffold0726 (113-235)||(5175-5294)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 87 - 321
Target Start/End: Complemental strand, 42958276 - 42958043
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  42958276 ctttgataacacatccaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatacattgcaa 42958178  T
Q  187 tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 285  Q
    ||||||| | ||| || ||||||||||||||| |||||||||||||||  |||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  42958177 tattttttattgagatagtcaatgtaacatagtaagtggaatgttaat--taaactggggcatataggtgatgttcttgtttgagaaattttggagaaat 42958080  T
Q  286 agaagggaagagcccctg-ctacagccaccccttccc 321  Q
    |||||| ||||||||||| ||||| ||||||||||||    
T  42958079 agaaggcaagagcccctgcctacaaccaccccttccc 42958043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 152 - 321
Target Start/End: Original strand, 18506628 - 18506797
Alignment:
Q  152 acacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatat 250  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||  |||||| ||||||    
T  18506628 acacattagtcatatcacttattcatactttgcgatattttttaatgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggtgcatat 18506725  T
Q  251 aagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctg-ctacagccaccccttccc 321  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||  ||| ||||| ||||||||||||    
T  18506726 aagtgatgttcttgtttgagaaatcttggagaaataaaaggcaagagcaactgcctacaaccaccccttccc 18506797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 95 - 304
Target Start/End: Original strand, 46352351 - 46352555
Alignment:
Q  95 acacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttc 194  Q
    ||||||||||||| |  |||| ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||     
T  46352351 acacatccaagtcttg-aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacattagtcatatcacttattcataatttgtgatatttttg 46352449  T
Q  195 actg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaaggga 293  Q
    | || ||| |||||||||||||||||||| ||||||||||  |||| ||| |   ||||||||| ||||||||| ||||||||| |||||||| |||| |    
T  46352450 attgaaaaagtcaatgtaacatagcaagttgaatgttaat--taaattgggg---ataagtgatattcttgttttagaaatctttgagaaataaaaggca 46352544  T
Q  294 agagcccctgc 304  Q
    |||||||||||    
T  46352545 agagcccctgc 46352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 113 - 318
Target Start/End: Complemental strand, 7486972 - 7486767
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||  |||| ||||  ||||||||| |||||||| | || ||| |||||||||    
T  7486972 aaaggacggagacatttcaaaaagagtgaaacaatgtttacatattagtcgcatcatttataaatactttgcaatatttttgattgaaaaagtcaatgta 7486873  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct-gctacagc 310  Q
    ||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||  ||||| |    
T  7486872 acatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttggagtaatagaaggcaagagcccctacctacaac 7486775  T
Q  311 cacccctt 318  Q
    ||||||||    
T  7486774 cacccctt 7486767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 15722893 - 15722784
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||| ||| | || ||| |||||||||    
T  15722893 aaaggacgaagacattttaaaaagagtgaaagaatgtttacacattaggcaaatcaccttttcatactttgcgatatatttgattgaaaaagtcaatgta 15722794  T
Q  212 acatagcaag 221  Q
    ||||||||||    
T  15722793 acatagcaag 15722784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 19193374 - 19193323
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcat 164  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  19193374 aaaggacgaagacattttaaaaagagtaaaagaatatttacacattagtcat 19193323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 88 - 321
Target Start/End: Complemental strand, 36562 - 36329
Alignment:
Q  88 tttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaa-gaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    |||||||||||||| ||||| | |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |    
T  36562 tttgataacacatcaaagtcttgcaaa-ggacgtagacatttcaaaaagagtgaaaagaatgtttacacattagtcatgtcacttattcatactttgcaa 36464  T
Q  187 tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 285  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  36463 tatttttcattgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggggcatataagtgatgttcttgtttgagaaatcttggagaaat 36366  T
Q  286 agaagggaagagcccct-gctacagccaccccttccc 321  Q
    |||| | ||||||||||  ||||| ||||||||||||    
T  36365 agaatgcaagagcccctacctacaaccaccccttccc 36329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 88 - 321
Target Start/End: Complemental strand, 5783099 - 5782866
Alignment:
Q  88 tttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaa-gaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    |||||||||||||| ||||| | |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |    
T  5783099 tttgataacacatcaaagtcttgcaaa-ggacgtagacatttcaaaaagagtgaaaagaatgtttacacattagtcatgtcacttattcatactttgcaa 5783001  T
Q  187 tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 285  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  5783000 tatttttcattgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggggcatataagtgatgttcttgtttgagaaatcttggagaaat 5782903  T
Q  286 agaagggaagagcccct-gctacagccaccccttccc 321  Q
    |||| | ||||||||||  ||||| ||||||||||||    
T  5782902 agaatgcaagagcccctacctacaaccaccccttccc 5782866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 13364155 - 13363959
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  13364155 ctttgataacacatccaagtctttcaaa-ggacgaagacatttcaaaaagagtgaaaaaatatttacacattaatcatatcacttattcatactttgcga 13364057  T
Q  187 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 285  Q
    ||||||| | || ||| |||||||||||||| |||||| ||||||||||   |||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  13364056 tatttttgattgaaaaagtcaatgtaacataacaagtgaaatgttaatt---aactggggcatataagtggtgttcttgtttgacaaatcttggagaaat 13363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 117 - 304
Target Start/End: Complemental strand, 29468305 - 29468120
Alignment:
Q  117 gacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgtaacat 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| | || ||| |||||||| ||||    
T  29468305 gacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtgacat 29468207  T
Q  216 agcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 304  Q
    ||||||||||||||||||  |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  29468206 agcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagcgcctgc 29468120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 300
Target Start/End: Original strand, 25417557 - 25417768
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  25417557 ctttgataacacatccaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcacttattcatactttgaga 25417655  T
Q  187 tatttttcactg--aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaa 284  Q
    ||||||| | ||  ||| ||  ||||||||||||||||||||||||||    || |||| |||||||||||||||| ||||||||||||| |||||| ||    
T  25417656 tatttttgattgaaaaaagttgatgtaacatagcaagtggaatgttaa--ccaatctggggcatataagtgatgttattgtttgagaaattttggag-aa 25417752  T
Q  285 tagaagggaagagccc 300  Q
    || |||| ||||||||    
T  25417753 taaaaggcaagagccc 25417768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 25546614 - 25546657
Alignment:
Q  115 aggacgaagacatttcaaaaagagtgaaagaatgtttacacatt 158  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||    
T  25546614 aggacaaagacatctcaaacagagtgaaagaatgtttacacatt 25546657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 87 - 321
Target Start/End: Complemental strand, 18767336 - 18767104
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    |||| ||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18767336 ctttaataacacattcaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatgttttcacattagtcatatcacttattcatactttgcga 18767238  T
Q  187 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 285  Q
    ||||||| | || ||| ||||||||||||||||||| |||||||||||  |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  18767237 tatttttgattgaaaaggtcaatgtaacatagcaagaggaatgttaat--taaactggagcatataagtgatattgttgtttgagaaatcttggagaaat 18767140  T
Q  286 agaagggaagagcccctg-ctacagccaccccttccc 321  Q
    |||| |||| ||||| || ||||| ||||||||||||    
T  18767139 agaa-ggaaaagcccatgcctacaaccaccccttccc 18767104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 87 - 321
Target Start/End: Complemental strand, 21392941 - 21392708
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    ||||||||||||||| ||||| | |||| |||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |    
T  21392941 ctttgataacacatctaagtcttgcaaa-ggacgaaggcatttcaaaaagagtgaaagaatgttaagacattagtcatgtcacttattcatactttgcaa 21392843  T
Q  187 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 285  Q
    |||| ||||  | |||  ||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  21392842 tattcttcatggaaaaattcaatgtaacatagcaagtggaatgttaat--taaactggggcatataagttatgttcttgtttgagaaatcttggagaaat 21392745  T
Q  286 agaagggaagagcccctg-ctacagccaccccttccc 321  Q
    |||||| ||||||||||| ||||| ||||||||||||    
T  21392744 agaaggcaagagcccctgcctacaaccaccccttccc 21392708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 20025424 - 20025226
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    ||||||||| ||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  20025424 ctttgataaaacatccaagtcttgcaaa-ggacgaagacatttcaaaaagaatgaaagaatgtttacacattagtcatatcacttattcatagtttgcga 20025326  T
Q  187 tatttttc-actgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaa 284  Q
    |||||||  | |||||  |||||||||||||||||| | || |||||||||  |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  20025325 tatttttttattgaaaaagtcaatgtaacatagcaaattgactgttaatta--aactggggcatataagtgatattcttgtttgagaaatcttggagaaa 20025228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 113 - 304
Target Start/End: Original strand, 14463994 - 14464183
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||| | || ||| | ||||||     
T  14463994 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgagatatttttaattgaaaaagccaatgtg 14464092  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 304  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  14464093 acatagcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgagaaatcttggagaaatagaaggcaagagcacctgc 14464183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 298
Target Start/End: Complemental strand, 15906651 - 15906468
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||| |||||||||| | || ||| ||||||||     
T  15906651 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatataactt-ctcatacttttcgatatttttgattgaaaaagtcaatgtg 15906553  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagc 298  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||| ||| ||||||| ||||| |||||||||||||||| ||||||    
T  15906552 acatagcaagtggaatgttaat--taaactggggcatataattgaggttgttgtttgcgaaatgttggagaaatagaaggcaagagc 15906468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 113 - 302
Target Start/End: Original strand, 31569786 - 31569974
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||||  |||| ||||  ||||||||| |||||||| | || ||| |||||||||    
T  31569786 aaaggacaaagacatttcaaaaagagtgaaacaatgtttacatattagtcgcatcatttataaatactttgcaatatttttgattgaaaaagtcaatgta 31569885  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 302  Q
    ||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| ||| |||||||||||  ||||||||||    
T  31569886 acatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttgaagaaatagaagacaagagcccct 31569974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 21683646 - 21683811
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    |||||||||||||||||| || | | |||||||   ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  21683646 ctttgataacacatccaaatcttgc-aaaggac---gacatttcacaaagagtgaaagaatatttacacattagtcatatcacttattcatactttggga 21683741  T
Q  187 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgat 257  Q
    ||||||| | || ||| |||||||||| ||||||| ||||||||||||  ||||| ||||||||||||||||    
T  21683742 tatttttgattgaaaaagtcaatgtaatatagcaaatggaatgttaat--taaaccggagcatataagtgat 21683811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 20881549 - 20881416
Alignment:
Q  123 gacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgtaacatagcaag 221  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||| |||||||||| |||||||     
T  20881549 gacatttcacaaagagtgaaagaatatttacacattagtcatatcacttattcatactttgggatatttttgattgaaaaagtcaatgtaatatagcaaa 20881450  T
Q  222 tggaatgttaattataaactggagcatataagtgat 257  Q
    ||||||||||||  ||||| ||||||||||||||||    
T  20881449 tggaatgttaat--taaaccggagcatataagtgat 20881416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 18715777 - 18715958
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||| | || ||| ||||||||     
T  18715777 aaaggaagaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttacgatatttttgattgaaaaagtcaatgtg 18715875  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagag 297  Q
    ||||||||||||||||||||||  |||||||| |||||||| || || | |||||| | |||| | ||| |||||||||| |||||    
T  18715876 acatagcaagtggaatgttaat--taaactggggcatataattgttg-tgttgtttcataaatgtcggataaatagaaggcaagag 18715958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 18785428 - 18785335
Alignment:
Q  206 aatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccc 301  Q
    ||||||||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  18785428 aatgtaacatagcaagtggaatgttaatta--aactgaggcatataagtgatgttcttgtttgagaaattttggagaaatagaaggcaagagcccc 18785335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 23160363 - 23160240
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||||||  |||| ||||  || ||||| ||||||||| | || ||| |||||||||    
T  23160363 aaaggacgaagacatttcaaaaagagtgaaacaatgtttacctattagtcgcatcatttataaatgctttgtgatatttttgattgaaaaagtcaatgta 23160264  T
Q  212 acatagcaagtggaatgttaatta 235  Q
    ||||||||||||||||||||||||    
T  23160263 acatagcaagtggaatgttaatta 23160240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 7964504 - 7964315
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||||||| | || ||| |||||||||    
T  7964504 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcaatatttttgattgaaaaagtcaatgta 7964406  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 304  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  7964405 acatagcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagcgcctgc 7964315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 113 - 304
Target Start/End: Original strand, 8224233 - 8224422
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||  |||||||||||||||||||| | || ||| ||||||||     
T  8224233 aaaggacgaagacatttcaaaaggagtgaaagcatatttacacattagtcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtg 8224331  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 304  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||||||| |||||||| |||| |||||||||||||||| |||||| |||||    
T  8224332 acatagcaagtggaatgttaat--taaactggggcatataattgatgttgttgtttgataaatgttggagaaatagaaggcaagagcgcctgc 8224422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 43974297 - 43974084
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    ||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  43974297 ctttgataacacatccaagtcttgcaaa-ggacaaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcacttattcatactttgtga 43974199  T
Q  187 tatttttcactgaaat-gtcaatgtaacata----gcaagtggaatgttaattataaactggag-catataagtgatgttcttgtttgagaaatcttgga 280  Q
    ||||||  | |||||  ||||||||||||||    ||||||| |||||||||||  |||||||| |||||||||| ||||||||||||| |||  |||||    
T  43974198 tattttg-attgaaaaagtcaatgtaacatatatagcaagtgaaatgttaatta--aactggaggcatataagtggtgttcttgtttgacaaa--ttgga 43974104  T
Q  281 gaaatagaagggaagagccc 300  Q
    ||||||  ||| ||||||||    
T  43974103 gaaataataggcaagagccc 43974084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 87 - 281
Target Start/End: Original strand, 22932518 - 22932710
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    |||| |||||||||||||||  | |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||    
T  22932518 ctttaataacacatccaagttttgcaaa-ggacgaagacatttcaaaaagagtgaaagaatatttacgcattagtcatatcacttattcatactttgaga 22932616  T
Q  187 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggag 281  Q
    ||||||| | || ||| ||  ||||| ||||||||||||||||||||    || | || |||||||||||||||| ||||||||||||| ||||||    
T  22932617 tatttttgattgaaaaagttgatgtagcatagcaagtggaatgttaa--ccaatccggggcatataagtgatgttattgtttgagaaattttggag 22932710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 16046777 - 16046675
Alignment:
Q  134 aagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaa 232  Q
    |||||||||| |||||||||  |||||||  |||| ||||  |||||||| ||||||||| | |||||  |||||||||| ||||| |||||||||||||    
T  16046777 aagagtgaaacaatgtttacctattagtcgcatcatttataaatactttgtgatatttttgattgaaaaagtcaatgtaatatagctagtggaatgttaa 16046678  T
Q  233 tta 235  Q
    |||    
T  16046677 tta 16046675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 42882628 - 42882439
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| | || ||| ||||||||     
T  42882628 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtg 42882530  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 304  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||| |||||| |||||    
T  42882529 acatagcaagtggaatgttaat--taaactggagcatataattgatgttgttgtttgataaatgttggagaaatagaaggcaagagcgcctgc 42882439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 95 - 321
Target Start/End: Original strand, 38925910 - 38926134
Alignment:
Q  95 acacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacaca--ttagtcatatcacttattcatactttgcgatatttt 192  Q
    ||||||||||||| |  |||| ||| ||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||| |||||||||||||    
T  38925910 acacatccaagtcttg-aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacacattagtcatatcacttattcataatttgcgatatttt 38926008  T
Q  193 tcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagg 291  Q
    | | |||||  ||||||||||||||| |||| ||||||||||||  |||||| |   ||||||||||||||||||| ||||||||| |||||||| || |    
T  38926009 tgattgaaaaagtcaatgtaacatagtaagttgaatgttaatta--aactgggg---ataagtgatgttcttgttttagaaatctttgagaaataaaacg 38926103  T
Q  292 gaagagcccctgc-tacagccaccccttccc 321  Q
     |||||||||||| |||| ||||| ||||||    
T  38926104 caagagcccctgcatacaaccaccacttccc 38926134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 22545367 - 22545234
Alignment:
Q  123 gacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgtaacatagcaag 221  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||| ||| |||||| |||||||     
T  22545367 gacatttcacaaagagtgaaataatatttacacattagtcatatcacttattcatactttgggatatttttgattgaaaaagtcgatgtaatatagcaaa 22545268  T
Q  222 tggaatgttaattataaactggagcatataagtgat 257  Q
    ||||||||||||  ||||| ||||||||||||||||    
T  22545267 tggaatgttaat--taaaccggagcatataagtgat 22545234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 32726383 - 32726246
Alignment:
Q  153 cacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatata 251  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||  |||||| |||||| | | |||||||  ||||||  |||||| |||||||    
T  32726383 cacattagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaataataatta--aactggggcatata 32726286  T
Q  252 agtgatgttcttgtttgagaaatcttggagaaatagaagg 291  Q
    ||||||||||||||||||||||| ||||| ||||| ||||    
T  32726285 agtgatgttcttgtttgagaaattttggaaaaatataagg 32726246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 43593211 - 43592995
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    |||||||||||||||||| || | |||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  43593211 ctttgataacacatccaaatcttgcaaa-ggacgaagacatttcaaaaagagtgaaataatatttatacattagtcatatcagttattcatactttgcga 43593113  T
Q  187 -----tatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttgga 280  Q
         | |||||   |||||  |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  43593112 gtttttttttttgtttgaaaaagtcaatgtaacatagcaagtggaatgttaatta--aactggagcatataagtgatgttcttatttgagaaatcttgga 43593015  T
Q  281 gaaatagaagggaagagccc 300  Q
    |||||| || ||||||||||    
T  43593014 gaaataaaatggaagagccc 43592995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 298
Target Start/End: Complemental strand, 19111668 - 19111485
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||| | || ||| ||||||||     
T  19111668 aaaggaagaaaacatttcaaaaagagtgaaagaatatttacacattaatcatatcactt-ctcatactttgcgatatttttgattgaaaaagtcaatgtg 19111570  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagc 298  Q
    ||||||||||||||||||||||  |||| ||| |||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||    
T  19111569 acatagcaagtggaatgttaat--taaattggggcatataattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagc 19111485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 52374763 - 52374821
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcactt 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52374763 aaaggacgaagacatttcaaaaagagtgaaagaatatttacacattagtcatatcactt 52374821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 50377784 - 50377893
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||| | ||||||||||| ||||| ||| | || ||| |||||| ||    
T  50377784 aaaggacgaagacattttaaaaatagtgaaaaaatgtttacacattaggcatatcaccttttcatactttgtgatatatttgattgaaaaagtcaattta 50377883  T
Q  212 acatagcaag 221  Q
    ||||||||||    
T  50377884 acatagcaag 50377893  T

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Target: scaffold0557 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 113 - 304
Target Start/End: Original strand, 6942 - 7130
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaatgtcaatgtaa 212  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||||||| | |||||  ||||||| |    
T  6942 aaaggacgaagacatttaaaaaagagtgaaagaatatttacacattagtcatatcactt-ctcatactttgcaatatttttgattgaaaattcaatgtga 7040  T
Q  213 catagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccctgc 304  Q
    |||||||||| ||||||||||  |||||| | |||| ||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  7041 catagcaagtagaatgttaat--taaactagggcatttaattgatgttgttgtttgagaaatgttggagaaatagaaggcaagagcgcctgc 7130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 87 - 304
Target Start/End: Complemental strand, 31913 - 31700
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    |||||||||||||| |||||| | |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||    
T  31913 ctttgataacacattcaagtcttgcaaa-ggacgaagacatttcaaaaagagtgaaaaaatatttacacattagtcatatcacttattcatactttgaga 31815  T
Q  187 tatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaat 285  Q
    || |||| | || ||| ||  ||||||||||||||||||||||||||    || |||| |||||||||||||||| |||||||||| || |||||| |||    
T  31814 ta-ttttgattgaaaaagttgatgtaacatagcaagtggaatgttaa--ccaatctggggcatataagtgatgttattgtttgagatattttggag-aat 31719  T
Q  286 agaagggaagagcccctgc 304  Q
    | |||| ||||||||||||    
T  31718 aaaaggcaagagcccctgc 31700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 95 - 321
Target Start/End: Original strand, 3568983 - 3569207
Alignment:
Q  95 acacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacaca--ttagtcatatcacttattcatactttgcgatatttt 192  Q
    ||||||||||||| |  |||| ||| ||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||| |||||||||||||    
T  3568983 acacatccaagtcttg-aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacacattagtcatatcacttattcataatttgcgatatttt 3569081  T
Q  193 tcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagg 291  Q
    | | |||||  ||||||||||||||| |||| ||||||||||||  |||||| |   ||||||||||||||||||| ||||||||| |||||||| || |    
T  3569082 tgattgaaaaagtcaatgtaacatagtaagttgaatgttaatta--aactgggg---ataagtgatgttcttgttttagaaatctttgagaaataaaacg 3569176  T
Q  292 gaagagcccctgc-tacagccaccccttccc 321  Q
     |||||||||||| |||| ||||| ||||||    
T  3569177 caagagcccctgcatacaaccaccacttccc 3569207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 112 - 302
Target Start/End: Complemental strand, 39702708 - 39702519
Alignment:
Q  112 aaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgt 210  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||||  |||| ||||  ||||||||| |||||||| | || ||| ||||||||    
T  39702708 aaaaggacggagacatttcaaaaagagtgaaataatgtttacatattagtcgcatcatttataaatactttgcaatatttttgattgaaaaagtcaatgt 39702609  T
Q  211 aacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 302  Q
    |||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  39702608 aacatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttggagtaatagaaggcaagagcccct 39702519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 1966765 - 1966870
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactg-aaatgtcaatgta 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| | || ||| |||||||||    
T  1966765 aaaggacgaagacattttaaaaagagtgaaagaatgtttacacattaggcatatcaccttttcatactttgcgatatatttgattgaaaaagtcaatgta 1966864  T
Q  212 acatag 217  Q
    ||||||    
T  1966865 acatag 1966870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 302
Target Start/End: Original strand, 6506469 - 6506655
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgta 211  Q
    |||||||||||||||||||||||||||||||  || ||| || ||||||| ||||| ||||  ||||||||| |||||||| | |||||  |||||||||    
T  6506469 aaaggacgaagacatttcaaaaagagtgaaa--atatttgcatattagtcgtatcatttataaatactttgcaatattttttattgaaaaagtcaatgta 6506566  T
Q  212 acatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 302  Q
    ||||||||||||||||||||||  |||  |||   ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  6506567 acatagcaagtggaatgttaat--taacttgggatatatatgtgatgttcttgtttgagaaattttggagaaatagaaggcaagagcccct 6506655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 87 - 304
Target Start/End: Original strand, 22186 - 22405
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaa-tgtttacac----attagtcatatcacttattcatactt 181  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||||||| ||| || | |||||||    ||||||||||||||||||||||||||    
T  22186 ctttgataacacatccaagtcttgcaaa-ggacgaagacatttcaaaaagagtaaaaaaaatatttacactttaattagtcatatcacttattcatactt 22284  T
Q  182 tgcgatatttttcactg-aaatgtcaatgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttgga 280  Q
    || ||||||||| | || ||| ||  || |||||||||||||||||||||||    || |||| |||||||||||||||| ||||||||||||| |||||    
T  22285 tgagatatttttgattgaaaaagttgatataacatagcaagtggaatgttaa--ccaatctggggcatataagtgatgttattgtttgagaaattttgga 22382  T
Q  281 gaaatagaagggaagagcccctgc 304  Q
    | |||| |||| ||||||||||||    
T  22383 g-aataaaaggcaagagcccctgc 22405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 302
Target Start/End: Complemental strand, 1733 - 1577
Alignment:
Q  145 aatgtttacacattagtcatatcacttattcatactttgcgatatttttcactgaaat-gtcaatgtaacatagcaagtggaatgttaattataaactgg 243  Q
    |||||||||| |||| ||  |||| ||||  ||||||||| |||||||| | | |||  |||||||||||||||||||||||||||||||||  |  |||    
T  1733 aatgtttacatattattcgcatcatttataaatactttgcaatatttttgattaaaaaagtcaatgtaacatagcaagtggaatgttaatta--acttgg 1636  T
Q  244 agcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcccct 302  Q
       ||||| ||||||||||||||||| |||| |||||| ||||||||| ||||||||||    
T  1635 gatatatatgtgatgttcttgtttgaaaaattttggagtaatagaaggcaagagcccct 1577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 28816 - 28775
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttaca 154  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  28816 aaaggacggagacatttcaaaaagagtgaaacaatgtttaca 28775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 16728 - 16687
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttaca 154  Q
    |||||||| || ||||||||||||||||||| ||||||||||    
T  16728 aaaggacggaggcatttcaaaaagagtgaaacaatgtttaca 16687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 112 - 299
Target Start/End: Original strand, 50165 - 50351
Alignment:
Q  112 aaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacatta----gtcatatcacttattcatactttgcgatatttttcactg-aaatgtca 206  Q
    |||| ||| ||||||||||||||| ||||||||||| |||||||||||    ||||||||||||||||||| |||||||||||||| | || ||| ||||    
T  50165 aaaatgacaaagacatttcaaaaatagtgaaagaatatttacacattaattagtcatatcacttattcataatttgcgatattttt-attgaaaaagtca 50263  T
Q  207 atgtaacatagcaagtggaatgttaattataaactggagcatataagtgatgttcttgtttgagaaatcttggagaaatagaagggaagagcc 299  Q
    |||||||||||||||| ||||||||||  |||||||| |   ||||||||| ||||||||| ||||||||| |||||||| |||| |||||||    
T  50264 atgtaacatagcaagttgaatgttaat--taaactgggg---ataagtgatattcttgttttagaaatctttgagaaataaaaggcaagagcc 50351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 9481 - 9588
Alignment:
Q  87 ctttgataacacatccaagtcctccaaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcga 186  Q
    ||||||||||||||| ||||| | |||| |||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |    
T  9481 ctttgataacacatctaagtcttgcaaa-ggacgaaggcatttcaaaaagagtgaaagaatgttaagacattagtcatgtcacttattcatactttgcaa 9579  T
Q  187 tatttttca 195  Q
    |||| ||||    
T  9580 tattcttca 9588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 5294 - 5175
Alignment:
Q  113 aaaggacgaagacatttcaaaaagagtgaaagaatgtttacacattagtcatatcacttattcatactttgcgatatt-tttcactgaaatgtcaatgta 211  Q
    |||||||||| ||||||||| |||||||||||| | |||||||||||||||||| ||||  ||||||||| |||||||  || |   ||| ||||||||     
T  5294 aaaggacgaatacatttcaacaagagtgaaagactatttacacattagtcatataactt-ctcatacttttcgatattaattga---aaaagtcaatgtg 5199  T
Q  212 acatagcaagtggaatgttaatta 235  Q
    ||||||||||||||||||||||||    
T  5198 acatagcaagtggaatgttaatta 5175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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