View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_low_23 (Length: 357)

Name: NF0653_low_23
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_low_23
NF0653_low_23
[»] chr2 (1 HSPs)
chr2 (6-339)||(4031249-4031582)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 4031582 - 4031249
Alignment:
Q  6 attactatgcctcgtcatctgtatatcgcgtgaaaaatgggtcctcttttgtgcatatggtgctgccctcgctataaaagaaaaaagagatatattattg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4031582 attactatgcctcgtcatctgtatatcgcgtgaaaaatgggtcctcttttgtgcatatggtgctgccctcgctataaaagaaaaaagagatatattattg 4031483  T
Q  106 tgatttcaaattaagacactatccatgtacaactacaagatcatatacatctagaaaaagctcaatgcagtaacagcatattaagatattaacatcctta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4031482 tgatttcaaattaagacactatccatgtacaactacaagatcatatacatctagaaaaagctcaatgcagtaacagcatattaagatattaacatcctta 4031383  T
Q  206 cctgcaatttgctgagcccggatgatattcttccgccttttacaccagcaaactgaacatgtaatcagaagtagaaaagtnnnnnnngcacctaagccaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       |||||||||||||    
T  4031382 cctgcaatttgctgagcccggatgatattcttccgccttttacaccagcaaactgaacaggtaatcagaagtagaaaagtaaaaaaagcacctaagccaa 4031283  T
Q  306 tgccaactttagcaccggcagaaagatgatgtcc 339  Q
    ||||||||||||||||||||||||||||| ||||    
T  4031282 tgccaactttagcaccggcagaaagatgaggtcc 4031249  T

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