View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_26 (Length: 344)
Name: NF0653_low_26
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 34910809 - 34910479
Alignment:
| Q |
4 |
tcaactccggttttgggtaatctttctattggaaattttgatatttttccattttattaattttcttgctcttagtaaattgtcttctttgaaaccagtt |
103 |
Q |
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| T |
34910809 |
tcaactccggttttgggtaatctttctattggaaattttgatatttttccattttattaattttcttgctcttagtaaattgtcttctttgaaaccagtt |
34910710 |
T |
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| Q |
104 |
tattggtagcaccatgtgatgtgtgagaagcacaatattttaaagtgaaatacgagttttcatacacatagattctttgtagtgcttagctaatgctttt |
203 |
Q |
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| T |
34910709 |
tattggtagcaccatgtgatgtgtgagaagcacaatattttaaagtgaaatacgagttttcatacacatagattatttgtagtgcttagctaatgctttt |
34910610 |
T |
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| Q |
204 |
aggaagattttgtttttacgaaggatttgcaaaccaactggtctagctttgcttactctgaatttactattattgtattttctttcttctttaatgaaga |
303 |
Q |
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| T |
34910609 |
aggaagattttgtttttacgaaggatttgcaaaccaactggtctagctttgcttactctgaatgtactattattgtattttctttcttctttaatgaaga |
34910510 |
T |
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| Q |
304 |
tttcatgtgaattaatgtgtgtgtgtctgtg |
334 |
Q |
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| T |
34910509 |
tttcatgtgaattaatgtgtgtgtgtgtgtg |
34910479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 183 - 334
Target Start/End: Original strand, 28542936 - 28543086
Alignment:
| Q |
183 |
tagtgcttagctaatgcttttaggaagattttgtttttacgaaggatttgcaaaccaactggtctagctttgcttactctgaatttactattattgtatt |
282 |
Q |
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| T |
28542936 |
tagtacttagctaatgcttttaggaagattttgtttttatgaaggatttgcaaacaaattg-tctagctttggttactttgaatttactattattgtatt |
28543034 |
T |
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| Q |
283 |
ttctttcttctttaatgaagatttcatgtgaattaatgtgtgtgtgtctgtg |
334 |
Q |
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| T |
28543035 |
ttatttcttctttaatgaagttttcatgtgaattaatgggtgtgtgtatgtg |
28543086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 28542797 - 28542925
Alignment:
| Q |
26 |
tttctattggaaattttgatatttttccattttattaattttcttgctcttagtaaattgtctt---------ctttgaaaccagtttattggtagcacc |
116 |
Q |
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| T |
28542797 |
tttctattggaaattttgatattttcccattttattaattgtcttgctcttggcaaactgtcttcatggaagcctttgaaaccagtttattggtagtgcc |
28542896 |
T |
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| Q |
117 |
atgtgatgtgtgagaagcacaatatttta |
145 |
Q |
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| T |
28542897 |
aggtgatttgtgagaagcacaatagttta |
28542925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 34905519 - 34905400
Alignment:
| Q |
91 |
tttgaaaccagtttatt---ggtagcaccatgtgatgtgtgagaagcacaatatttta---aagtgaaatacgagttttcatacacatagattctttgta |
184 |
Q |
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| T |
34905519 |
tttgaaaccagtttattattggtagtgtcatgtgatgtgtgagaagcacaatattttaaagaagtgaaataacagttttcatacacatggatattttgta |
34905420 |
T |
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| Q |
185 |
gtgcttagctaatgctttta |
204 |
Q |
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| T |
34905419 |
gtgcttagccaattctttta |
34905400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 34905373 - 34905307
Alignment:
| Q |
248 |
agctttgcttactctgaatttactattattgtattttctttcttctttaatgaagatttcatgtgaa |
314 |
Q |
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| T |
34905373 |
agctttgctaaatctgaatttattattattgtattttctttcttctctaatgaagatttcatgtgaa |
34905307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 34896937 - 34896848
Alignment:
| Q |
116 |
catgtgatgtgtgagaagcacaatatttta-aagtgaaatacgagttttcatacacatagattctttgtagtgcttagctaatgctttta |
204 |
Q |
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| T |
34896937 |
catgtgatgtgtgagaagcacaatattaaagaagcgaaataacagttttcatacacatggatattttgtagtgcttagccaatgctttta |
34896848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 34896821 - 34896753
Alignment:
| Q |
248 |
agctttgcttactctgaatttactattattgtattttctttcttctttaatgaagatttcatgtgaatt |
316 |
Q |
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| T |
34896821 |
agctttgctaaatctgaatttattattatcatattttctttcttttctaatgaagatttcatgtgaatt |
34896753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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