View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_27 (Length: 343)
Name: NF0653_low_27
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 36226854 - 36227007
Alignment:
| Q |
118 |
ctaatgcttttccctctcctatcaaggaataggcataagtgacttgctcaaagtagaatgtcatatgagaagataatttcagaatcctcccgttgatgca |
217 |
Q |
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| T |
36226854 |
ctaatgcttttccctctcctatcaaggaataggcataagtgacttgctaaaagtagaatgtcatacgagaagataattttagaatcctcctgttgatgca |
36226953 |
T |
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| Q |
218 |
ttgcttagctaatttagtctctgttctcatcgctgctctggttgaatggaaggg |
271 |
Q |
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| T |
36226954 |
ttgcttagctaatttagtctctgttctcatcgctgctctggttgaatggaaggg |
36227007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 16542655 - 16542548
Alignment:
| Q |
212 |
gatgcattgcttagctaatttagtctctgttctcatcgctgctctggttgaatggaagggaggtaggccttatttaggagtgtaccgatgttaacgatgg |
311 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16542655 |
gatgcattgcttagttaatttagtctatgttctcatcgctgctctggttgaatggaagggaggtaggccttatttaggagtgtaccgatgttaacaatgg |
16542556 |
T |
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| Q |
312 |
tggtgatg |
319 |
Q |
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|||||||| |
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| T |
16542555 |
tggtgatg |
16542548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 8250565 - 8250688
Alignment:
| Q |
36 |
gtatgaatgcattcatcaacagaagtttcatcctcggattcccacctcagacttattcatcatcgttctggtactggccggcctaatgcttttccctctc |
135 |
Q |
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| T |
8250565 |
gtatgaatacattcatcaacataagtttcatcctcggattcccacctcaaacttattcatcatcgttctagtaccggccgtcctactgcttttccctctt |
8250664 |
T |
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| Q |
136 |
ctatcaaggaataggcataagtga |
159 |
Q |
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| T |
8250665 |
atatcaaggaacagacataagtga |
8250688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33512115 - 33512053
Alignment:
| Q |
1 |
gcttggcctagaatgagcaagggatagagatgatggtatgaatgcattcatcaacagaagttt |
63 |
Q |
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| T |
33512115 |
gcttggcctagaatgagcaagggatatagttgatgttatgaatgcattcatgaacagaagttt |
33512053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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