View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_3 (Length: 638)
Name: NF0653_low_3
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 239 - 503
Target Start/End: Complemental strand, 10258330 - 10258066
Alignment:
| Q |
239 |
ccttttaagtcaacgtgatttgtcggtgatccatctctcttgaacacaactttcccattatcaacagcaaaaacccaacaatcctttgatagcttcttag |
338 |
Q |
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| T |
10258330 |
ccttttaagtcaacgtgatttgtcggtgatccatctctcttgaacacaactttcccattatcaacagcaaaaacccaacaatcctttgatagcttcttag |
10258231 |
T |
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| Q |
339 |
cacaatacctaggtaaagaaatagttggtctaataagaccttgagattttccaactataacatgagttgcacaatattcatttgcttctctaaccaaaat |
438 |
Q |
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| T |
10258230 |
cacaatacctaggtaaagaaatagttggtctaataagaccttgagattttccaactataacatgagttgcacaatattcatttgcttctctaaccaaaat |
10258131 |
T |
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| Q |
439 |
tctcctcactgacgaaccccggcaaatttttagcttcagatccacctacatcattttccaaattt |
503 |
Q |
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| T |
10258130 |
tctcctcactgacgaaccccggcaaatttttagcttcagatccacctacatcattttccaaattt |
10258066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 10258483 - 10258369
Alignment:
| Q |
88 |
acatcatcatttagtacttttgaactcttgctgaatgtccgttgtatcgaaccaagcaacccaattcggtgacctacaacaactcataaactaagaacac |
187 |
Q |
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| T |
10258483 |
acatcatcatttagtacttttgaactcttgctgaatgtccgttgtatcgaaccaagcaacccaattcggtgacctacaacaactcataaactaagaactc |
10258384 |
T |
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| Q |
188 |
taacattcacatata |
202 |
Q |
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| T |
10258383 |
taacattcacatata |
10258369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 605
Target Start/End: Complemental strand, 10258041 - 10257968
Alignment:
| Q |
529 |
tggcacttgatacatacatatttctttaaattaacttttgtctattattaaccctctgattctcagaaagtaaagtc |
605 |
Q |
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| T |
10258041 |
tggcacttgatacatacatatttctttaaattaacttttgtct---attaaccttctgattctcagaaagtaaagtc |
10257968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 387 - 488
Target Start/End: Complemental strand, 40376649 - 40376548
Alignment:
| Q |
387 |
ttccaactataacatgagttgcacaatattcatttgcttctctaaccaaaattctcctcactgacgaaccccggcaaatttttagcttcagatccaccta |
486 |
Q |
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| T |
40376649 |
ttccaacaataacatgagatgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggcaaatttttagtttaagatccaccta |
40376550 |
T |
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| Q |
487 |
ca |
488 |
Q |
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|| |
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| T |
40376549 |
ca |
40376548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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