View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_low_31 (Length: 326)

Name: NF0653_low_31
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_low_31
NF0653_low_31
[»] chr3 (1 HSPs)
chr3 (23-318)||(46441770-46442065)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 318
Target Start/End: Complemental strand, 46442065 - 46441770
Alignment:
Q  23 atcatcataaactattaaatttgtgctactacgacatccaatattagcaagtccatctgcacacatgttcgcttcccgataagaatgacttatcgttatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46442065 atcatcataaactattaaatttgtgctactacgacatccaatattagcaagtccatctgcacacatgttcgcttcccgataagaatgacttatcgttatt 46441966  T
Q  123 tcccgctcacgctccattagttgccgaattttctgcacttgtctccaaccattggcactaacacaccctttcttaatactcatgaatcatgataactgct 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46441965 tcccgctcacgctccattagttgccgaattttctgcactggtctccaaccattggcactaacacaccctttcttaatactcatgaatcatgataactgct 46441866  T
Q  223 tgggaatcaatacacaactccagtctccaccgccttgaatcctcgatcaatcaccatctgaagcccaagcaaaactcctcaaagctcgcctatgct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46441865 tgggaatcaatacacaactccagtctccaccgccttgaatcctcgatcaatcaccatctgaagcccaagcaaaactccccaaagctcgcctatgct 46441770  T

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