View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_low_34 (Length: 316)

Name: NF0653_low_34
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_low_34
NF0653_low_34
[»] chr8 (3 HSPs)
chr8 (182-308)||(16010084-16010209)
chr8 (22-129)||(16010221-16010336)
chr8 (219-263)||(14319873-14319917)
[»] chr1 (2 HSPs)
chr1 (219-310)||(41100927-41101016)
chr1 (219-262)||(23956416-23956459)
[»] chr2 (1 HSPs)
chr2 (229-310)||(15481118-15481198)
[»] chr3 (2 HSPs)
chr3 (228-310)||(26970746-26970826)
chr3 (219-304)||(33239879-33239963)
[»] chr7 (1 HSPs)
chr7 (219-262)||(13562278-13562321)
[»] chr4 (1 HSPs)
chr4 (219-263)||(19130855-19130899)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 182 - 308
Target Start/End: Complemental strand, 16010209 - 16010084
Alignment:
Q  182 gctatcagtccctacaagaaaacttgagaatttgaccaaaatttctgaggaaacatggtttctcgctaaaataaaggttttttcgtggaataatttcctc 281  Q
    |||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16010209 gctatcagtcactacaaggaaacttgagaatttgatcaaaatttatgaggaaacatggtttctcgctaaaat-aaggtttttccgtggaataatttcctc 16010111  T
Q  282 ggtattcacatgtcaggaatctctgct 308  Q
    | |||||| ||||||||||||||||||    
T  16010110 gatattcatatgtcaggaatctctgct 16010084  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 16010336 - 16010221
Alignment:
Q  22 catcatcagagtcttccaatcaaaataa--------aaatttcccattggaatcttgaatataatacacaacttgttttattgattaaccgattgaaact 113  Q
    |||||||||||||||| |||||||||||        |||||| |||||||||||||||||| ||||||||||||||||||||| || || |||| |||||    
T  16010336 catcatcagagtcttcaaatcaaaataatcataaacaaattttccattggaatcttgaatacaatacacaacttgttttattggttgacagatttaaact 16010237  T
Q  114 agcttcaacattacat 129  Q
    ||  ||||||||||||    
T  16010236 agtgtcaacattacat 16010221  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 14319873 - 14319917
Alignment:
Q  219 aaaatttctgaggaaacatggtttctcgctaaaataaaggttttt 263  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||    
T  14319873 aaaatttccgaggaagcatggtttctcgcaaaaataaaggttttt 14319917  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 41100927 - 41101016
Alignment:
Q  219 aaaatttctgaggaaacatggtttctcgctaaaataaaggttttttcgtggaataatttcctcggtattcacatgtcaggaatctctgctcc 310  Q
    |||||||| |||||||| || |||||| ||||||||||| ||||  || |||| |||||||||||||| ||| |||||||||||||||||||    
T  41100927 aaaatttc-gaggaaacttgatttctcactaaaataaagattttc-cgaggaacaatttcctcggtatgcacgtgtcaggaatctctgctcc 41101016  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 23956416 - 23956459
Alignment:
Q  219 aaaatttctgaggaaacatggtttctcgctaaaataaaggtttt 262  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||    
T  23956416 aaaatttccgaggaagcatggtttctcgcaaaaataaaggtttt 23956459  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 15481198 - 15481118
Alignment:
Q  229 aggaaacatggtttctcgctaaaataaaggttttttcgtggaataatttcctcggtattcacatgtcaggaatctctgctcc 310  Q
    ||||||| ||||||||||||||||||||||| |||||| | || |||||||||||||| ||| ||||  |||||||| ||||    
T  15481198 aggaaacttggtttctcgctaaaataaaggt-ttttcgagtaacaatttcctcggtatgcacgtgtcgtgaatctctactcc 15481118  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 26970826 - 26970746
Alignment:
Q  228 gaggaaacatggtttctcgctaaaataaaggttttttcgtggaataatttcctcggtattcacatgtcaggaatctctgctcc 310  Q
    |||||||| | |||||| |||||||||||||| |||||  |||| ||||||||| |||| ||| |||||||||||||||||||    
T  26970826 gaggaaactttgtttcttgctaaaataaaggt-ttttcaaggaacaatttcctc-gtatgcacgtgtcaggaatctctgctcc 26970746  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 33239963 - 33239879
Alignment:
Q  219 aaaatttctgaggaaacatggtttctcgctaaaataaaggttttttcgtggaataatttcctcggtattcacatgtcaggaatctc 304  Q
    |||| ||| |||||||  |||||||||||||||||||||| |||| || ||||  ||||||||||||| | | |||||||||||||    
T  33239963 aaaaattccgaggaaatttggtttctcgctaaaataaagg-ttttccgaggaactatttcctcggtatgctcgtgtcaggaatctc 33239879  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 13562278 - 13562321
Alignment:
Q  219 aaaatttctgaggaaacatggtttctcgctaaaataaaggtttt 262  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||    
T  13562278 aaaatttctgcggaagcatggtttctcgcaaaaataaaggtttt 13562321  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 19130855 - 19130899
Alignment:
Q  219 aaaatttctgaggaaacatggtttctcgctaaaataaaggttttt 263  Q
    |||||||| |||||| ||||||||||||| ||||||||| |||||    
T  19130855 aaaatttccgaggaagcatggtttctcgcaaaaataaagtttttt 19130899  T

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