View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_35 (Length: 314)
Name: NF0653_low_35
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 31430588 - 31430764
Alignment:
| Q |
125 |
ttgaatttagtgttggattgaatgcatatgtgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttatcatgtgatgcgatg |
224 |
Q |
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| T |
31430588 |
ttgaatttagtgttggattgaatgcatatttgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttaccatgtgatgcgatg |
31430687 |
T |
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| Q |
225 |
atttggaattgttcatccggttatagtatgaaaattaaataaatttggttttcttttaagtgtggctagtgtattct |
301 |
Q |
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| T |
31430688 |
atttggaattgttcatccggttatattatgaaaattaaataaatttggttttcttttaagtgtggctagtgtgttct |
31430764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 31430483 - 31430550
Alignment:
| Q |
20 |
ctttgtggctggtgtttgataaggtttggagtttgaaggatgattattctatctggtgttgctttgac |
87 |
Q |
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| T |
31430483 |
ctttgtggctggtgtttgataaggtttggagtttgaaggataattattctatctggtgttgctttgac |
31430550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 32849063 - 32848903
Alignment:
| Q |
140 |
gattgaatgcatatgtgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttatcatgtgatgcgatgatttggaattgttca |
239 |
Q |
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| T |
32849063 |
gattgaatgcatatgtgttgctttatttgatgctagatgataaagaatgaagtaagaaagcaaatgattatcatgtgatgtgatgatttggaattgttca |
32848964 |
T |
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| Q |
240 |
tccggttatagtatgaaaattaaataaatttggttttct-tttaagtgtggctagtgtatt |
299 |
Q |
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| T |
32848963 |
accggttatattatgaaaattaaataacgttggttttctattttagtgtggttagtgtatt |
32848903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 11430145 - 11430267
Alignment:
| Q |
140 |
gattgaatgcatatgtgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttatcatgtgatgcgatgatttggaattgttca |
239 |
Q |
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| T |
11430145 |
gattgaatgcatatgtgttgctttatttgatgctagatgataaagaatgaagtaagaaagcaaatgattatcatgtgatgtgatgatttggaattgttca |
11430244 |
T |
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| Q |
240 |
tccggttatagtatgaaaattaa |
262 |
Q |
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| T |
11430245 |
accagttatattatgaaaattaa |
11430267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 41283839 - 41283774
Alignment:
| Q |
20 |
ctttgtggctggtgtttgataaggtttggagtttgaaggatgattattctatctggtgttgctttg |
85 |
Q |
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| T |
41283839 |
ctttgtggctggtgtttgataaggtttggagtttgtaggataattattctatctggtgttgttttg |
41283774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 41283207 - 41283135
Alignment:
| Q |
226 |
tttggaattgttcatccggttatagtatgaaaattaaataaatttggttttct-tttaagtgtggctagtgta |
297 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||| |
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| T |
41283207 |
tttggaattgttcatctggttatattatgaaaattaaatatagttggttttctatttaagtgtggctagtgta |
41283135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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