View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_low_41 (Length: 292)

Name: NF0653_low_41
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_low_41
NF0653_low_41
[»] chr5 (7 HSPs)
chr5 (1-276)||(10825643-10825919)
chr5 (1-280)||(7262849-7263138)
chr5 (70-276)||(19876498-19876704)
chr5 (70-276)||(37980260-37980465)
chr5 (1-204)||(23067167-23067382)
chr5 (111-276)||(24169462-24169627)
chr5 (1-47)||(19876740-19876786)
[»] chr1 (9 HSPs)
chr1 (1-276)||(31387446-31387720)
chr1 (1-275)||(4911865-4912139)
chr1 (1-276)||(42463552-42463827)
chr1 (1-276)||(27105953-27106230)
chr1 (1-276)||(46192222-46192497)
chr1 (1-276)||(15291508-15291793)
chr1 (70-276)||(18242871-18243077)
chr1 (127-276)||(42055805-42055954)
chr1 (70-276)||(50914796-50915002)
[»] chr7 (11 HSPs)
chr7 (1-276)||(46526346-46526621)
chr7 (1-275)||(6272781-6273058)
chr7 (1-280)||(42014049-42014330)
chr7 (1-268)||(41964256-41964532)
chr7 (70-276)||(31593737-31593942)
chr7 (101-276)||(10554526-10554701)
chr7 (70-208)||(45075571-45075710)
chr7 (127-270)||(3939852-3939995)
chr7 (1-47)||(45415235-45415281)
chr7 (81-158)||(11405164-11405241)
chr7 (14-47)||(45075528-45075561)
[»] chr8 (7 HSPs)
chr8 (1-280)||(41269773-41270054)
chr8 (1-276)||(44115848-44116124)
chr8 (1-280)||(42095687-42095975)
chr8 (70-276)||(8317040-8317246)
chr8 (101-276)||(20477648-20477823)
chr8 (78-280)||(18701177-18701379)
chr8 (1-47)||(18701080-18701126)
[»] chr3 (14 HSPs)
chr3 (1-277)||(177751-178028)
chr3 (1-280)||(48164719-48164997)
chr3 (1-280)||(18942927-18943208)
chr3 (1-275)||(45034591-45034865)
chr3 (1-276)||(52561006-52561294)
chr3 (151-280)||(18908113-18908242)
chr3 (70-269)||(55150760-55150959)
chr3 (161-273)||(9108-9220)
chr3 (1-156)||(18911880-18912037)
chr3 (71-279)||(13825446-13825654)
chr3 (100-280)||(54315312-54315492)
chr3 (70-155)||(10817-10902)
chr3 (1-57)||(23585209-23585265)
chr3 (1-57)||(23600032-23600088)
[»] chr2 (19 HSPs)
chr2 (1-280)||(31501061-31501345)
chr2 (1-242)||(26393702-26393951)
chr2 (73-273)||(4174696-4174896)
chr2 (70-280)||(40612850-40613060)
chr2 (1-202)||(19508503-19508705)
chr2 (72-276)||(2777064-2777268)
chr2 (91-276)||(34458432-34458617)
chr2 (101-276)||(2119882-2120057)
chr2 (70-279)||(29902164-29902373)
chr2 (78-280)||(15738222-15738424)
chr2 (192-276)||(694860-694944)
chr2 (70-279)||(21833397-21833606)
chr2 (79-207)||(20725488-20725616)
chr2 (120-221)||(26172682-26172783)
chr2 (1-47)||(15738124-15738170)
chr2 (4-47)||(4174935-4174978)
chr2 (241-280)||(26172642-26172681)
chr2 (1-33)||(2119773-2119805)
chr2 (240-280)||(26391556-26391596)
[»] chr6 (7 HSPs)
chr6 (1-280)||(5620232-5620514)
chr6 (1-290)||(33523337-33523637)
chr6 (1-268)||(19268673-19268951)
chr6 (188-276)||(2946153-2946241)
chr6 (70-256)||(23058639-23058828)
chr6 (137-280)||(33522380-33522523)
chr6 (1-47)||(2946286-2946332)
[»] chr4 (5 HSPs)
chr4 (1-280)||(54602476-54602758)
chr4 (1-280)||(12024806-12025093)
chr4 (70-268)||(39388810-39389008)
chr4 (120-280)||(16347123-16347283)
chr4 (1-47)||(39388727-39388773)
[»] scaffold1043 (2 HSPs)
scaffold1043 (70-280)||(2965-3175)
scaffold1043 (14-47)||(2890-2923)
[»] scaffold0079 (1 HSPs)
scaffold0079 (120-280)||(45578-45738)
[»] scaffold0688 (1 HSPs)
scaffold0688 (70-189)||(5433-5552)
[»] scaffold0097 (1 HSPs)
scaffold0097 (79-207)||(29317-29445)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 10825643 - 10825919
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctactgcctagc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||    
T  10825643 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcctaatcacaatcaaccctactgcctagc 10825742  T
Q  100 atgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtc 199  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10825743 atgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtc 10825842  T
Q  200 atctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10825843 atctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcaggcatctc 10825919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 7263138 - 7262849
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctac 91  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||        |||||||||||||||        |||| ||||||||||||||| |    
T  7263138 tcatagaaataaaaaaatgtacggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacataaaaaaaagccttatcataatcaaccctgc 7263039  T
Q  92 tgcctagcatgcctcggccccc-tgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcc 190  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  7263038 tgcctagcatgcctcggcccccctgcgccgcctggtaatctgatacgtaagggaagggcgaccagtaccggctatccgcatcacctcctggacaatatcc 7262939  T
Q  191 tctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7262938 tctttagtcatcttggcttgcctgaccacaatatcgtcagctatatgcaccacatctcggatgatcgtcggtgtgttaggcatctctctg 7262849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 70 - 276
Target Start/End: Complemental strand, 19876704 - 19876498
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||||||||| ||||||||||| |||||||||||| ||| ||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19876704 gcctaatcataattaaccctactgcgtagcatgcctcgcccctctgcgctgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgc 19876605  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  19876604 atcacctcctagacaatctcctctttagtcatctcgacttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgttagtgtgtcag 19876505  T
Q  270 gcatctc 276  Q
    |||||||    
T  19876504 gcatctc 19876498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 70 - 276
Target Start/End: Original strand, 37980260 - 37980465
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||| ||||||| |||| ||| ||| | |||||| | |||||  ||||||||| ||||||||| |||||||||||||||| ||||| | ||||| ||    
T  37980260 gcctaataataatcagccctgctgtctaccctgcctctgacccctacgccgcctggcaatctgataagtaagggcagggcgactagtactg-ctatcagc 37980358  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  37980359 atcacctcgtggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtcag 37980458  T
Q  270 gcatctc 276  Q
     ||||||    
T  37980459 acatctc 37980465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 23067382 - 23067167
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn---gcctaatcataatcaaccc 88  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||         ||| |||||||||||          ||||||||||||||||| |    
T  23067382 tcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcaaagtaaaaaagtacataaaaaaaaaagcctaatcataatcaactc 23067283  T
Q  89 tactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatct 188  Q
    || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23067282 tattgcctagcttgcctcggccccctgcgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccccatcacctcctggacaatct 23067183  T
Q  189 cctctttagtcatctc 204  Q
    ||||||||||||||||    
T  23067182 cctctttagtcatctc 23067167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 111 - 276
Target Start/End: Complemental strand, 24169627 - 24169462
Alignment:
Q  111 ccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttg 210  Q
    ||||| ||||||||  |||||||||  |||||||||  |||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24169627 ccctgcgccgcctgacaatctgataattaagggcagtacgactagtactagctatccgcatcacctcctggacaatctcctttttagtcatctcggcttg 24169528  T
Q  211 cctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||    
T  24169527 cctggccacaatatcgtcagcaatatgcaccacatcttggatgatcgtcagtgtgtcaggcatctc 24169462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19876786 - 19876740
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 47  Q
    |||||||||||  |||||||| ||| |||||||||||||||||||||    
T  19876786 tcatagaaataagaaaatgtatggagcatgtcataattatacatcac 19876740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 31387720 - 31387446
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctactgcctagca 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||| |||||||||| ||||||||||    
T  31387720 tcatagaaatatcaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacgtaaaaaa-gcctaatcacaatcaaccctgctgcctagca 31387622  T
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  31387621 tgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccacatcacctcctggacagtctcctctttagtca 31387522  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31387521 tctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcaggcatctc 31387446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 4911865 - 4912139
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctactgcctagca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||| |||||||| | |||||||| |    
T  4911865 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacaatcaaaaagtacataaaaaaagcctaatcacaatcaaccatgctgcctagta 4911964  T
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    |||||| |||||||| ||||||||| |||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||    
T  4911965 tgcctcagccccctgcgccgcctggcaatctgatatataagggcagggcgaccaataccggctacccgcatcacctcctggacaatcttctctttagtca 4912064  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatct 275  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |||||||||||||||    
T  4912065 tctcggcttgcctggccacaatatcatcggttatatgcaccacatcccggatgatcgtcagtgtgtcaggcatct 4912139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 42463552 - 42463827
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctactgcctagca 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       ||||||||  |||||||| | | ||||||||    
T  42463552 tcatagaaataccaaaatgtacgaaacatgtcataattatacatcacagtgaaaaagtacataaaaaaagcctaatcgcaatcaaccatgcggcctagca 42463651  T
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    ||||||||| ||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42463652 tgcctcggctccctgcgccgcctgacaatctaatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctcgttagtca 42463751  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  42463752 tctcggctttcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgttagtgtgtcagacatctc 42463827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 27105953 - 27106230
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn--gcctaatcataatcaaccctactgcctag 98  Q
    ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| |||||         ||||||||| |||||||| | ||||||||    
T  27105953 tcatagaaataccaaaatgtacgaaacatgtcataattatatgtcacagtcaaaaaatacataaaaaaaaagcctaatcacaatcaaccatgctgcctag 27106052  T
Q  99 catgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagt 198  Q
    ||||||||||||||||  ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27106053 catgcctcggccccctacgccgcctgacaatctgatacataagggcagggcgaccagtaccggctatccgcatcacctcctggaaaatctcctctttagt 27106152  T
Q  199 catctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    |||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  27106153 catctcggcttgcctgaccacaatatcatcagctatatgcaccatatcccggatgatcgtcagtgtgtcagacatctc 27106230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 46192222 - 46192497
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctactgcctagca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       | |||||||||||||| | | |||||||| |    
T  46192222 tcatacaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaattacataaaaaaagtctaatcataatcaaacgtgctgcctagaa 46192321  T
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    ||||||||||||||  | ||||||  |||||||||| |||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||    
T  46192322 tgcctcggccccctacgtcgcctgacaatctgatacataaggggagggcgactagtaccggttatccgcatcacctccaggacaatctcctctttagtca 46192421  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||| ||||||    
T  46192422 tctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgatcgtgagtgtgtcagacatctc 46192497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 15291508 - 15291793
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn-gcctaatcataatcaacccta 90  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||         ||| ||| |||||||        |||||||||||||||||| ||    
T  15291508 tcatagaaataaaaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaatagtacataaaaaaaagcctaatcataatcaacctta 15291607  T
Q  91 ctgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcc 190  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  15291608 ctgcctagcatgcctcggccctctgcgccgcctggcaatctgatacgtaagggcaggacgaccaataccggctatccgtatcacctcctggacaatctcc 15291707  T
Q  191 tctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  15291708 tatttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcagacatctc 15291793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 70 - 276
Target Start/End: Complemental strand, 18243077 - 18242871
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||| ||||||| |||| ||||||| | |||||| |||||||| ||||||||| ||||||||| |||||||||||||||| |||||  | |||| |     
T  18243077 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagatatctgt 18242978  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||    
T  18242977 atcacctcctagacgatctcctctttagtcatatcggcttgcctggccacaatatcgtcagcaatatgcaccagatccgggatgatcgtcagtgtgtcag 18242878  T
Q  270 gcatctc 276  Q
    |||||||    
T  18242877 gcatctc 18242871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 42055805 - 42055954
Alignment:
Q  127 aatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||     
T  42055805 aatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagctttcttggccacaatatca 42055904  T
Q  227 tcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
     || |||||||||| |||||| ||||||||||| ||||||||||||||||    
T  42055905 ccaactatatgcacaacatcctggatgatcgtcagtgtgtcaggcatctc 42055954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 70 - 276
Target Start/End: Complemental strand, 50915002 - 50914796
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||| ||||||| |||| ||||||| | | |||| | |||||| ||||||||  ||| ||||| |||||||||||||| | |||||  |||||||||    
T  50915002 gcctaataataatcagccctgctgcctaccctacctctggcccctgcgccgcctgacaatttgataagtaagggcagggcggctagtactagctatccgc 50914903  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || |||||||||    
T  50914902 atcacctcctggacgatctcctctttagtcgtctcggcttgcctggccacaatatcgtcaacaatatgcaccacatctcggatgatcctcagtgtgtcag 50914803  T
Q  270 gcatctc 276  Q
    |||||||    
T  50914802 gcatctc 50914796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 46526346 - 46526621
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctactgcctagca 100  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||        ||||||||||||||||||| ||||||||||    
T  46526346 tcatacaaataccaaaatgtaaggaacatgtcataattatacgtcacagtaaaaaagtacataaaaaaaccctaatcataatcaaccctgctgcctagca 46526445  T
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  46526446 tgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtaccggctatccgcatcacctactggacaatctcctctttagtca 46526545  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||    
T  46526546 tctcggcttgcctagccacaatatcgccaactatatgcaccacatcccggatgatcgtcagtgtgtcaggcatctc 46526621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6272781 - 6273058
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng---cctaatcataatcaaccctactgccta 97  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||           | ||||||||||||| | |||||||||    
T  6272781 tcatacaaataccaaaatgtacgaaacatgtcataattatacatcacagtaaaaaagtacataaaaaaaaaaccttaatcataatcaatcttactgccta 6272880  T
Q  98 gcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttag 197  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6272881 gcatgcctcggccccctgcgccgcctggaaatctgatacgtaagggcagggtgaccagtaccggctatccgcatcacctcctggacaatctcctctttag 6272980  T
Q  198 tcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatct 275  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||   ||||||||||||||    
T  6272981 tcatctcgtcttgcctggccacaatatcgtcaactatatgcaccacatcccagatgatcgttaatgtgtcaggcatct 6273058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 42014330 - 42014049
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcataatcaaccctactgcctag 98  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||          |||||||||||||||| || ||||||||    
T  42014330 tcatacaaataccaaaatgtacggaatatgtcataattatacataacagtaaaaaagtacataaaaaaaaaccctaatcataatcaactctgctgcctag 42014231  T
Q  99 catgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagt 198  Q
    |||||||||||||||||  |||||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  42014230 catgcctcggccccctgctccgcctagcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggaaaatcttctctttagt 42014131  T
Q  199 catctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  42014130 catctcggcttgcctggccacaatatcatcagctatatgcaccacatctcggatgatcgtcaatgtgtcaggcatctctctg 42014049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 41964532 - 41964256
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnngcctaatcataatcaaccctac 91  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||         ||| |||||||||||       || |||||||||||||||||||    
T  41964532 tcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaaaagtacataaaaaaagcttaatcataatcaaccctac 41964433  T
Q  92 tgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcct 191  Q
    |||||||||||||||| ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41964432 tgcctagcatgcctcgaccccctgcgtcgtctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggaaaatctcct 41964333  T
Q  192 ctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtca 268  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||| || |||||    
T  41964332 ctttagtcatctcggcttgcctgaccacaatatcatcaactatattcaccacatcccggatgatcgtcagtctgtca 41964256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 70 - 276
Target Start/End: Complemental strand, 31593942 - 31593737
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||| ||||||| |||| ||||||| | ||||||  |||| || ||||||||| ||||||||| |||||||||||||||| |||||  |||||||||    
T  31593942 gcctaataataatcagccctgctgcctaccctgcctctacccc-tgcgccgcctggaaatctgataagtaagggcagggcgactagtactagctatccgc 31593844  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    ||||  |||| ||| |||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  31593843 atcaaatcctagacgatctcctctttagtcatctcggcttggctagccacaatatcgtcagcaatttgcaccacatcccggatgatcgtcagtgtgtcag 31593744  T
Q  270 gcatctc 276  Q
    |||||||    
T  31593743 gcatctc 31593737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 101 - 276
Target Start/End: Complemental strand, 10554701 - 10554526
Alignment:
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    |||||| | |||||| | ||||||| ||| ||||| |||||||||||||||| |||||  ||||||  |||||||||||||| |||||||||||||||||    
T  10554701 tgcctctggcccctgcgtcgcctggcaatttgataagtaagggcagggcgactagtactagctatctacatcacctcctggataatctcctctttagtca 10554602  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  |||||||||||||||    
T  10554601 tctcggcttgcctggccacaatatcgtcaccaatatgcaccacatcccggatgatcgtcaatgtgtcaggcatctc 10554526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 45075571 - 45075710
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccc-tgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccg 168  Q
    ||||||||||||||||||||  |||||||||||||||| ||||| |  ||||||||| ||||||||||||||||  | || || ||||||||||||||||    
T  45075571 gcctaatcataatcaaccctgttgcctagcatgcctcgccccccctacgccgcctggcaatctgatacgtaaggatatggtgatcagtaccggctatccg 45075670  T
Q  169 catcacctcctggacaatctcctctttagtcatctcggct 208  Q
    ||||||||| |||| ||||||||||||| | |||||||||    
T  45075671 catcacctcttggataatctcctctttatttatctcggct 45075710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 270
Target Start/End: Complemental strand, 3939995 - 3939852
Alignment:
Q  127 aatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcg 226  Q
    |||||||||| |||||| |||||||||||||| | | ||||| |||| |||||| || | |||||||||||| ||||||||   | ||||||||| ||      
T  3939995 aatctgatacataagggtagggcgaccagtactgccaatccggatcatctcctgcaccagctcctctttagttatctcggcgctcatggccacaacatta 3939896  T
Q  227 tcagctatatgcaccacatcccggatgatcgtcggtgtgtcagg 270  Q
    ||| |||| ||||| |||||||  ||||||||| ||||||||||    
T  3939895 tcaactatctgcacgacatccctaatgatcgtcagtgtgtcagg 3939852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45415281 - 45415235
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 47  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  45415281 tcatggaaatacaaaaatgtacggaacatgtcataattatacatcac 45415235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 11405164 - 11405241
Alignment:
Q  81 atcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtac 158  Q
    ||||||||| |||||||  ||||||  |||||||| || | ||||  || |||||| |||||||||||||||||||||    
T  11405164 atcaaccctgctgcctacgatgcctatgccccctgcgctgtctggccatttgatacataagggcagggcgaccagtac 11405241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 45075528 - 45075561
Alignment:
Q  14 aaaatgtacggaacatgtcataattatacatcac 47  Q
    |||||||||| |||||||||||||||||||||||    
T  45075528 aaaatgtacgaaacatgtcataattatacatcac 45075561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 41270054 - 41269773
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngcc-taatcataatcaaccctactgcctag 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||        || ||||||||||||||||| ||||||||    
T  41270054 tcatataaataccaaaatgtacggaacatgtcataattatacatcacagtaaaaaaagtaaataaaaaaaaccctaatcataatcaaccctgctgcctag 41269955  T
Q  99 catgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagt 198  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41269954 catgccttggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcttggacaatctcctctttagt 41269855  T
Q  199 catctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41269854 catctcggtttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcaggcatctctctg 41269773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 44115848 - 44116124
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctactgcctagc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||    
T  44115848 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcctaatcacaatcaaccctactgcctagc 44115947  T
Q  100 atgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtc 199  Q
    |||| || |||||||| ||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44115948 atgcatcagccccctgcgccacctagcaatctgatacgtaagggcagggcgaccggtaccggctatccgcatcacctcctggacaatctcctctttagtc 44116047  T
Q  200 atctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||||||||||| ||||    
T  44116048 atctcggcttgcctggccacaatatcatcagctatatgcaccacatcctagatgatcgtcagtgtgtcaggcgtctc 44116124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 42095687 - 42095975
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctac 91  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||        |||||||||||||||        | ||||||||||| |||| | |    
T  42095687 tcatagaaataataaaatgtacggaacatgtcattattatacatcaccatgatcaagtcaaaaagtacataaaaaaaagtctaatcataatgaaccttgc 42095786  T
Q  92 tgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcct 191  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  42095787 tgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccaataccgactatccgcatcacctcctggacaatctcct 42095886  T
Q  192 ctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||||||||||||||||||| ||||||||||| |||  ||||||||||||||| |||||||||||| | ||||||| ||| ||||||    
T  42095887 ctttagtcatctcggcttgcctagccacaatatcatcaaatatatgcaccacatctcggatgatcgtcagcgtgtcagacatttctctg 42095975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 70 - 276
Target Start/End: Original strand, 8317040 - 8317246
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||||| |||||||||| || ||||||||| ||| ||| | || ||||||||| ||||||||| |||||||||||||||| ||||   |||||||||    
T  8317040 gcctaatcacaatcaaccctgctacctagcatgtctctgcctcatgcgccgcctggcaatctgataagtaagggcagggcgactagtagtagctatccgc 8317139  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||     
T  8317140 atcacctcctggacaatctcctatttagtgatctcggtttgcttggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtcaa 8317239  T
Q  270 gcatctc 276  Q
    |||||||    
T  8317240 gcatctc 8317246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 101 - 276
Target Start/End: Original strand, 20477648 - 20477823
Alignment:
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    |||||| |||||||| ||||||| | ||| ||||| |||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||||||||    
T  20477648 tgcctctgccccctgcgccgcctcgcaatatgataagtaagggcagggcgactagtactagctatccgcatcacctcctggacgatctcctctttagtca 20477747  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  20477748 tctcggcatgcctggccacaatatcatcagcaatatgcaccacatcccatatgatcgtcagtgtgtcaggcatctc 20477823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 18701177 - 18701379
Alignment:
Q  78 ataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctc 177  Q
    ||||||| |||||||| |||  ||||||| |||||||| |  |||||| ||||||||||||||||||||||||||| |||| | | ||||| ||||||||    
T  18701177 ataatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctc 18701276  T
Q  178 ctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctct 277  Q
    ||  ||| | |||||||||||||||| | |   ||| | ||||||||  |||||||| |||||||||||||  ||||||||| |||||||||||||||||    
T  18701277 ctaaacagtatcctctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcaggcatctct 18701376  T
Q  278 ctg 280  Q
    |||    
T  18701377 ctg 18701379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18701080 - 18701126
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 47  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||    
T  18701080 tcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 18701126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 177751 - 178028
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctactgcctagc 99  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||        | ||||||||||||||||||  ||||||||    
T  177751 tcatagaaataccaaaatgtacggaacatgtcataattatactttacattcaaaaagtacataaaaaaaagtctaatcataatcaaccctgttgcctagc 177850  T
Q  100 atgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtc 199  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  177851 atgcctcggccccctatgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatcttctctttagtc 177950  T
Q  200 atctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctct 277  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  177951 atctcggcttgcctggccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtgtcaggcatctct 178028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 48164997 - 48164719
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctactgcctagca 100  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||        ||||||||||||||||||| ||||||||||    
T  48164997 tcatacaaataccaaaatgtacggaacatgtcataattat-catcacagtaaaaaagtacataaaaaaaccctaatcataatcaaccctgctgcctagca 48164899  T
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    ||||||| ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48164898 tgcctcgaccccctgcgccgcctgacaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatatcctctttagtca 48164799  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    ||||||||| ||||| ||||||||| |||| ||||||||||||||| |||||||||||| ||||||||  ||||||||||    
T  48164798 tctcggctttcctggtcacaatatcatcagttatatgcaccacatctcggatgatcgtcagtgtgtcaaacatctctctg 48164719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 18942927 - 18943208
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcataatcaaccctactgcctag 98  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||          ||||||||||||||||||| ||||||||    
T  18942927 tcatacaaataccaaaatgtacggaacatgtcataattataaatcacagtcacaaagtacataaaaaaaaaccctaatcataatcaaccctgctgcctag 18943026  T
Q  99 catgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagt 198  Q
    ||||||||| |||||||  |||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18943027 catgcctcgaccccctgcaccgcctcgcaatttgatacgtaagggcagggcgaccagtaccggctatccgtatcacctcctggacaatctcctctttagt 18943126  T
Q  199 catctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| || |||||||| |||||||||||    
T  18943127 catctcggcttgcctggccacaatatcgtcaggtatatgcaccacatacaggatgatcatcagtgtgtcaagcatctctctg 18943208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 45034865 - 45034591
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctactgcctagca 100  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||        ||||||||||||||||||| ||||||||||    
T  45034865 tcatacaaataccaaaatatacggaacatgtcataattatacatcagagtaaaaaagtacataaaaaaaccctaatcataatcaaccctgctgcctagca 45034766  T
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||  || |||||||    
T  45034765 tgcctcggccccctgcgccgcctggcaatttgatacgtaagggcggggcgatcagtaccggatatccgcatcacctcctggacaatcttttcattagtca 45034666  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatct 275  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  45034665 tctcagcttgcctggccacaatatcatcagctatatgcaccacctcccggatgatcgccagtgtgtcaggcatct 45034591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 52561294 - 52561006
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtca---------aaaagtacatnnnnnnngcctaatcata----atcaacc 87  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||||         ||||||||||        ||||||||||    |||||||    
T  52561294 tcatagaaataagaaaatgtacggaacatgtcataattatacatcacggtcatcatagtaaaaaagtacataaaaaaaacctaatcatatataatcaacc 52561195  T
Q  88 ctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatc 187  Q
    |||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52561194 ctactgcctagcatgcctcggccccctgcgccgcctgacaatctgttacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatc 52561095  T
Q  188 tcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  52561094 tcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgattgtcagtgtgtcagacatctc 52561006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 18908242 - 18908113
Alignment:
Q  151 accagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccgg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |    
T  18908242 accagtaccggctatccgcatcacctcctggacaatctcctctttaggcatttcggcttgcctggccacagtatcgtcagctatatgcaccacatcccag 18908143  T
Q  251 atgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||| || ||||||||||||||||||||    
T  18908142 atgatcatcagtgtgtcaggcatctctctg 18908113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 70 - 269
Target Start/End: Complemental strand, 55150959 - 55150760
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||| |||||||  | | ||||||| | |||||| |||||||| ||||||||| ||||||||| |||||||||||||||| |||||  | |||||||    
T  55150959 gcctaataataatcagtcatgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagttatccgc 55150860  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||| || |||||||||    
T  55150859 atcacctcctagacgatctcctctttagtcctctcggcttgcctgaccataatatcgtcagcaatatgcaccacatctcggatgatcatcagtgtgtcag 55150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 9220 - 9108
Alignment:
Q  161 gctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcg 260  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||     
T  9220 gctatccgcatcacctcctggacaatctcctttctactcatctcggcttgcctggccacaatatcatcagcaatatgcaccacatcccggatgatcgtca 9121  T
Q  261 gtgtgtcaggcat 273  Q
     ||||||||||||    
T  9120 ctgtgtcaggcat 9108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 18912037 - 18911880
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng---cctaatcataatcaaccctactgccta 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||           ||||||||||||||||| | |||||||    
T  18912037 tcatacaaataccaaaatgtacggaacatgtcataattatacatcacagt-aaaaagtgcataaaaaaaaaaacctaatcataatcaaccttgctgccta 18911939  T
Q  98 gcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagt 156  Q
    |||||| | ||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  18911938 gcatgctttggccccctgcgccgcctggcaatctgatatgtaagggcagggcgaccagt 18911880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 279
Target Start/End: Original strand, 13825446 - 13825654
Alignment:
Q  71 cctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgca 170  Q
    |||||| ||||||||||||||||||||   |||||  |||||||| || |||||| |||| ||||| ||||||||||||||| |||||   | ||||  |    
T  13825446 cctaatgataatcaaccctactgcctatggtgcctatgccccctgcgctgcctggcaatccgatacataagggcagggcgactagtactatcaatccaaa 13825545  T
Q  171 tcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcagg 270  Q
    ||| |||||| || | |||| ||||||||||||||||   | | ||||||| ||  |||||||| ||||| ||||||| |||||||||  ||||||||||    
T  13825546 tcatctcctgcaccagctccgctttagtcatctcggcactcatagccacaacattatcagctatctgcacgacatccctgatgatcgtaagtgtgtcagg 13825645  T
Q  271 catctctct 279  Q
    |||||||||    
T  13825646 catctctct 13825654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 280
Target Start/End: Original strand, 54315312 - 54315492
Alignment:
Q  100 atgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtc 199  Q
    ||||||| |||| ||| || |||||| || ||||||||||||||||||||||||| ||  | | ||||  ||| ||| ||  | |||||||| | |||||    
T  54315312 atgcctctgccctctgcgctgcctggcaaactgatacgtaagggcagggcgaccaatattgtcaatcctaatcgccttctaaataatctcctatgtagtc 54315411  T
Q  200 atctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||| | |   ||||||||||||||  ||| |||| ||||||||||||| ||||||||||  |||||||||||||||||||    
T  54315412 atcttgccgctcctggccacaatattatcatctatctgcaccacatccctgatgatcgtcaatgtgtcaggcatctctctg 54315492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 10902 - 10817
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccag 155  Q
    ||||||| ||||||| |||| ||||||| | |||||| |||||||| ||||||||  ||||||||| |||||||||||||||||||    
T  10902 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctgacaatctgataagtaagggcagggcgaccag 10817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23585265 - 23585209
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaag 57  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  23585265 tcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23585209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23600088 - 23600032
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaag 57  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  23600088 tcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23600032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 31501061 - 31501345
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-----gcctaatcataatcaaccctactgcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||| |||||||||| |||||    
T  31501061 tcatagaaataccaaaatgtacggaacatgtcataattatacatcatagtcaaaaagtacataaaaaaaaaaaagcctaatcacaatcaaccctgctgcc 31501160  T
Q  96 tagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctcttt 195  Q
    |||||||||||||||||||| | ||||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  31501161 tagcatgcctcggccccctgcgtcgcctgaaaatctgatacgtaagggcaaggcgaccagtaccggctatccacatcacctcctggacaatatcctcttt 31501260  T
Q  196 agtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||    
T  31501261 agtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggataatcgtcagtttgtcaggcatctctctg 31501345  T

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Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 26393951 - 26393702
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnngcctaatcataatcaaccctact 92  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||        |||||||||||||||       |||||||||||||||||||| ||    
T  26393951 tcatagaaataaaaaaatgtatggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacatataaaaagcctaatcataatcaaccctgct 26393852  T
Q  93 gcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctc 192  Q
    | ||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  26393851 gactagcatgcctcggccccctgcgtcgccgggtaatctgatacgtaagggcagggcaaccagtactggctatccacatcacctcctggacaatctcctc 26393752  T
Q  193 tttagtcatctcggcttgcctggccacaatatcgtcagctatatgcacca 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26393751 tttagtcatctcggattgcctggccacaatatcgtcagctatatgcacca 26393702  T

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Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 73 - 273
Target Start/End: Complemental strand, 4174896 - 4174696
Alignment:
Q  73 taatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatc 172  Q
    |||| |||||||||||||||||||||||| ||||| ||| | | ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  4174896 taattataatcaaccctactgcctagcatacctcgacccacagcgccgcttggcaatctgatacgtaacggcagggcgaccagtaccggctatccgcatc 4174797  T
Q  173 acctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggca 272  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  4174796 acctcctggacaatctcctctttagtcatctcggcttgtctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgttaggca 4174697  T
Q  273 t 273  Q
    |    
T  4174696 t 4174696  T

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Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 70 - 280
Target Start/End: Original strand, 40612850 - 40613060
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||| ||| ||||  ||||||||||||| ||||||||||| |||||||||| ||||||    
T  40612850 gcctaatcataatcaaccctgctgcctaccatgcctctgccccctgcgccacctgacaatctgatacgtacgggcagggcgatcagtaccggccatccgc 40612949  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||    
T  40612950 atcacctcctagacaatctcctctttagtcatctcggcttgcttggccacaatatcattagctatatgaaccacatcccggatgatcgtcagtgtgtcag 40613049  T
Q  270 gcatctctctg 280  Q
    |||||||||||    
T  40613050 gcatctctctg 40613060  T

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Target: chr2; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 19508705 - 19508503
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcataatcaaccctactgcctag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||          |||||||||||||||| || ||||||||    
T  19508705 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtccaaaagtacataaaaaaaaaccctaatcataatcaacactgctgcctag 19508606  T
Q  99 catgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagt 198  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19508605 catgccttggccccctgtgccgcctggcaatctgatacgtaaggaca-tgcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagt 19508507  T
Q  199 catc 202  Q
    ||||    
T  19508506 catc 19508503  T

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Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 72 - 276
Target Start/End: Complemental strand, 2777268 - 2777064
Alignment:
Q  72 ctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcat 171  Q
    ||||| ||||||| || | ||||||| | |||||| |||||||| ||||||||| ||||||||| ||||||| ||||| || |||||  |||||||||||    
T  2777268 ctaataataatcagccatgctgcctaccctgcctctgccccctgcgccgcctggaaatctgataagtaaggggagggccactagtactagctatccgcat 2777169  T
Q  172 cacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||  ||||||||||    
T  2777168 cacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcaacaatatgcatcacatcccggatgatcgtcaatgtgtcaggc 2777069  T
Q  272 atctc 276  Q
    |||||    
T  2777068 atctc 2777064  T

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Target: chr2; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 276
Target Start/End: Complemental strand, 34458617 - 34458432
Alignment:
Q  91 ctgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcc 190  Q
    ||||||| ||||| |  |||||||| ||||||||| ||||||||| |||||||||||| |||| ||||| |||||| | |||||||||||||||||| ||    
T  34458617 ctgcctaccatgcatatgccccctgcgccgcctggcaatctgatatgtaagggcagggagaccggtacctgctatctgtatcacctcctggacaatcacc 34458518  T
Q  191 tctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  34458517 tctttaatcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccgaatgatcgtcagtgtgtcaggcatctc 34458432  T

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Target: chr2; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 101 - 276
Target Start/End: Original strand, 2119882 - 2120057
Alignment:
Q  101 tgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtca 200  Q
    |||||| |||||||| ||||||||  ||||||||| |||||||||  ||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  2119882 tgcctctgccccctgcgccgcctgaaaatctgataagtaagggcaacgcgactagtactagctatccgcatcacctcctggacaatctcctctttagtca 2119981  T
Q  201 tctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    |||||||||| |||||||||||| | ||| ||||||||||| |||| |||||||||||| ||||||||||||||||    
T  2119982 tctcggcttgtctggccacaataccatcaactatatgcaccccatctcggatgatcgtcagtgtgtcaggcatctc 2120057  T

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Target: chr2; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 70 - 279
Target Start/End: Complemental strand, 29902373 - 29902164
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||||| |||||||||| |||||||  ||| ||| |||||||  || |||||| ||||  ||| |||||||||||||||||||||  | | |||||     
T  29902373 gcctaatcaaaatcaaccctgctgcctacgatgtctctgccccctacgctgcctggaaatccaatatgtaagggcagggcgaccagtagtgccaatccga 29902274  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    ||||||||||| |  ||||||||||||||||||||| |   |||| |||||||||  |||||||| |||||||||||||||||||||||| |||||||      
T  29902273 atcacctcctgaaatatctcctctttagtcatctcgccactcctgaccacaatattatcagctatctgcaccacatcccggatgatcgtcagtgtgtcga 29902174  T
Q  270 gcatctctct 279  Q
    ||||||||||    
T  29902173 gcatctctct 29902164  T

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Target: chr2; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 15738222 - 15738424
Alignment:
Q  78 ataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctc 177  Q
    ||||||| |||||||| |||  ||||||| |||||||| |  |||||| ||||||||||||||||||||||||||| |||| | | ||||| ||||||||    
T  15738222 ataatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctc 15738321  T
Q  178 ctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctct 277  Q
    ||  ||| | |||||||||||||||| | |   ||| | ||||||||  |||||||| |||||||||||||  ||||||||| |||||||||||||||||    
T  15738322 ctaaacagtatcctctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcaggcatctct 15738421  T
Q  278 ctg 280  Q
    |||    
T  15738422 ctg 15738424  T

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Target: chr2; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 694860 - 694944
Alignment:
Q  192 ctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  694860 ctttagtcatctcggcttgcctagccacaatatcatcagttatatgcaccacatcccggatgatcgtcagtgtgtcaggcatctc 694944  T

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Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 279
Target Start/End: Complemental strand, 21833606 - 21833397
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||| ||||||||| || |||||||  ||||||| |||||||| |  |||||  |||  |||| ||||||||||||||||||||||   | |||||     
T  21833606 gcctaatgataatcaactctgctgcctacgatgcctctgccccctgagatgcctgacaattcgatatgtaagggcagggcgaccagtactaccaatccgg 21833507  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    |||| |||||| |||| ||||||||||||||||||  | ||| ||||||||| ||  ||||| |  ||||| ||||||| |||||| |||  ||||||||    
T  21833506 atcatctcctgcacaagctcctctttagtcatctcttcctgcatggccacaacattatcagccacctgcacgacatccctgatgattgtcaatgtgtcag 21833407  T
Q  270 gcatctctct 279  Q
    | ||||||||    
T  21833406 ggatctctct 21833397  T

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Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 20725616 - 20725488
Alignment:
Q  79 taatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcc 178  Q
    |||| |||||| |||||||  ||||||  ||||||||||| || ||  |||||||||| ||||||||||||||||||||| | | ||||| |||| ||||    
T  20725616 taattaaccctgctgcctacgatgcctatgccccctgtgctgcatgacaatctgatacataagggcagggcgaccagtactgccaatccggatcatctcc 20725517  T
Q  179 tggacaatctcctctttagtcatctcggc 207  Q
    || || | |||||||||||||||||||||    
T  20725516 tgcacgagctcctctttagtcatctcggc 20725488  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 26172783 - 26172682
Alignment:
Q  120 gcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccac 219  Q
    |||||| ||||| |||||||||||||||||||||||||| | | ||||| || | |||||| || | |||| ||||||||||||| || ||| |||||||    
T  26172783 gcctggcaatctaatacgtaagggcagggcgaccagtactgccaatccggataatctcctgcaccagctccgctttagtcatctctgcctgcatggccac 26172684  T
Q  220 aa 221  Q
    ||    
T  26172683 aa 26172682  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15738124 - 15738170
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 47  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||    
T  15738124 tcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 15738170  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 4174978 - 4174935
Alignment:
Q  4 tagaaataccaaaatgtacggaacatgtcataattatacatcac 47  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||    
T  4174978 tagaaataagaaaatgtacagaacatgtcataattatacatcac 4174935  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 26172681 - 26172642
Alignment:
Q  241 cacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  26172681 cacatccctgatgatcgtcagtgtgtcaggcatctctctg 26172642  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2119773 - 2119805
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  2119773 tcatagaaatatcaaaatgtacggaacatgtca 2119805  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 26391596 - 26391556
Alignment:
Q  240 ccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  26391596 ccacatctcggatgatcgttagtgtgtcaggcatctctctg 26391556  T

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Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 5620514 - 5620232
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn---gcctaatcataatcaaccctactgccta 97  Q
    ||||| ||||| ||||||||||||||  |||||||||||||||||| ||| |||||||||||          |||||||||||||||||||| |||||||    
T  5620514 tcatacaaatatcaaaatgtacggaatgtgtcataattatacatcatagtaaaaaagtacataaaaaaaaaagcctaatcataatcaaccctgctgccta 5620415  T
Q  98 gcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttag 197  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  5620414 gcatgcctcggctccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtatcggctatccgcatcacctcctggacaatctcttctttag 5620315  T
Q  198 tcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||| ||||||    
T  5620314 tcatctcggcttgtctgtccacaatatcgtcaactatatgcaccacatctcggatgatcatcagtgtgtcaggcatatctctg 5620232  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 33523637 - 33523337
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnngcctaatcataatcaaccctac 91  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||         |||| ||||||||||       ||||||||||||||||||||||    
T  33523637 tcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccataatcatagtccaaaagtacataaaaaaagcctaatcataatcaaccctac 33523538  T
Q  92 tgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcct 191  Q
    || ||| | |||| | |||||||| ||||||| | ||||||||| |||||||||||||| ||||||| |||||| || ||||||||||||||||||||||    
T  33523537 tgtctaccctgccgctgccccctgcgccgcctagcaatctgatatgtaagggcagggcggccagtactggctattcgtatcacctcctggacaatctcct 33523438  T
Q  192 ctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg--tgctcctcc 289  Q
    | |||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||  |||||||||    
T  33523437 ccttagtcatctcgtctttcctggccacaatatcatcagttatatgcaccacatcccggatgatcgtcagtgtgtcagacatctctctgcatgctcctcc 33523338  T
Q  290 t 290  Q
    |    
T  33523337 t 33523337  T

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Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 19268673 - 19268951
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn--gcctaatcataatcaaccct 89  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||| |||||         ||||||||| ||||||||||    
T  19268673 tcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccatcatcatagtcaaaaaatacataaaaaaaaagcctaatcagaatcaaccct 19268772  T
Q  90 actgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctc 189  Q
     ||||||| |||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||| | |||||||| |||||||||||    
T  19268773 gctgcctaccatgcctctgccccctgcgccgcctggcaatctgatacgtatgggcagggcgaccagtactggctatctgaatcacctcttggacaatctc 19268872  T
Q  190 ctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtca 268  Q
    ||||||| |||||||| | | ||| ||||||||||| |||||||||||||||||||| | |||||||||| ||||||||    
T  19268873 ctctttaatcatctcgtcgttccttgccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtgtca 19268951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 2946241 - 2946153
Alignment:
Q  188 tcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctc 276  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2946241 tcctctttagtcatctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgattgtcagtgtgtcaggcatctc 2946153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 256
Target Start/End: Complemental strand, 23058828 - 23058639
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcag---ggcgaccagtaccggctatc 166  Q
    ||||||| | |||||||||| |||||||  ||||||| ||| |||| ||  ||||| |||| |||||||||||||||   |||||||||||  | | |||    
T  23058828 gcctaataagaatcaaccctgctgcctacgatgcctctgccacctgcgctacctggaaatccgatacgtaagggcagcagggcgaccagtagtgccaatc 23058729  T
Q  167 cgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatc 256  Q
    || | |||||| || |||||||||||||||||||||||  |   | ||||||||||||| |||||||| ||||||||||| |||||||||    
T  23058728 cgaaacacctcatgaacaatctcctctttagtcatctcaccgctcatggccacaatatcatcagctatctgcaccacatctcggatgatc 23058639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 33522380 - 33522523
Alignment:
Q  137 gtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatat 236  Q
    ||||||||| |||||| ||||||| |||| ||||| |||||||||| |||||||| |||||||   ||||| |  ||||| |||||||| ||||||||||    
T  33522380 gtaagggcaaggcgactagtaccgactattcgcataacctcctggaaaatctcctttttagtcccgtcggcctttctggcaacaatatcatcagctatat 33522479  T
Q  237 gcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||||||| ||||||||| ||  |||||||| ||| ||||||    
T  33522480 gcaccacatctcggatgatcttcaatgtgtcagacatatctctg 33522523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2946332 - 2946286
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 47  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  2946332 tcatagaaataccaaaatatacggaacatgtcataattatatatcac 2946286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 54602476 - 54602758
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngcc--taatcataatcaaccctactgccta 97  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||          |  ||||  ||||||||||| |||||||    
T  54602476 tcatacaaataccaaaatgtatggaacatgtcataattatacatcacagtaaaaaaagtacaaaaaaaaaaaccttaattttaatcaaccctgctgccta 54602575  T
Q  98 gcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttag 197  Q
    |||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||  | ||| ||||||||||||||||||| ||||||||||    
T  54602576 gcatgcctcggccccctgcgccgcctggcaatctaatacgtaagggcagggcgaccagtaccaacaatctgcatcacctcctggacaatttcctctttag 54602675  T
Q  198 tcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54602676 tcatctcggcttgcctaaccacaatatcgtcagctatatgcaccacatcccggatgatcgtcagtgtgtcaggcatctctctg 54602758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 12024806 - 12025093
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnngcctaatcataatcaaccctact 92  Q
    ||||| |||||  ||||||||  ||||||||||||||||||||||||        |||||||||||||||        |||||||||| | |||| | ||    
T  12024806 tcatataaataaaaaaatgtatagaacatgtcataattatacatcaccatgatcaagtcaaaaagtacataaaaaaatcctaatcatagttaaccatgct 12024905  T
Q  93 gcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctc 192  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12024906 tcctggcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccgggtatccgcatcacctcctggacaatctcctc 12025005  T
Q  193 tttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| || ||||| ||| ||||||||||    
T  12025006 tttagtcatctcggctttcctggccacaatatcgtcatctatatgcaccacatctcggatgatcatcagtgtgccagacatctctctg 12025093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 70 - 268
Target Start/End: Original strand, 39388810 - 39389008
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||||||||||||||||||||||||||||||||  |||||||  ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  39388810 gcctaatcataatcaaccctactgcctagcatgccttagccccctacgccacctggcaatctgatacgtaaggtcagggcgaccagtaccggctatccgc 39388909  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtca 268  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||| ||||||||    
T  39388910 atcacctcctgaacaatctcctctttagtcatcccggcttgcctgaccacaatatcatcagttatatgtaccacatcccggatgatcgtcagtgtgtca 39389008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 120 - 280
Target Start/End: Original strand, 16347123 - 16347283
Alignment:
Q  120 gcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccac 219  Q
    |||||| |||| |||| ||||||||| |||||||||||  | | ||||  ||||||||||| |||||||||||||||||||||||| |   |||||||||    
T  16347123 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 16347222  T
Q  220 aatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||| |||||||| ||||||| || ||||||||||||| ||||||||| ||||||||||    
T  16347223 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcagacatctctctg 16347283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39388727 - 39388773
Alignment:
Q  1 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 47  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||    
T  39388727 tcatagaaataagaaaatgtacgaaacatgtcataattatacatcac 39388773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 70 - 280
Target Start/End: Original strand, 2965 - 3175
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  2965 gcctaatcataatcaaccctgttgcctagcacgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggatatccgc 3064  T
Q  170 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcag 269  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| | ||||| |||  |||||||||    
T  3065 atcacctcctggacaatctcctctttagtcatctcggtttgcctggctacaatatcatcagctatatgcaccacatctcagatgaccgttagtgtgtcag 3164  T
Q  270 gcatctctctg 280  Q
     ||||||||||    
T  3165 acatctctctg 3175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 2890 - 2923
Alignment:
Q  14 aaaatgtacggaacatgtcataattatacatcac 47  Q
    ||||||||||||||||||||||||||||||||||    
T  2890 aaaatgtacggaacatgtcataattatacatcac 2923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 120 - 280
Target Start/End: Complemental strand, 45738 - 45578
Alignment:
Q  120 gcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcggcttgcctggccac 219  Q
    |||||| |||| |||| ||||||||| |||||||||||  | | ||||  ||||||||||| |||||||||||||||||||||||| |   |||||||||    
T  45738 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 45639  T
Q  220 aatatcgtcagctatatgcaccacatcccggatgatcgtcggtgtgtcaggcatctctctg 280  Q
    |||||| |||||||| ||||||| || ||||||||||||| ||||||||| ||||||||||    
T  45638 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcagacatctctctg 45578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 5552 - 5433
Alignment:
Q  70 gcctaatcataatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgc 169  Q
    ||||||| ||||||| |||| ||||||| | |||||| |||||||| ||||||| | ||||| ||| |||||||||||||||| |||||  |||||||||    
T  5552 gcctaataataatcagccctgctgcctaccttgcctctgccccctgcgccgcctagcaatctaataagtaagggcagggcgactagtactagctatccgc 5453  T
Q  170 atcacctcctggacaatctc 189  Q
    |||||||||||||| |||||    
T  5452 atcacctcctggacgatctc 5433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 29445 - 29317
Alignment:
Q  79 taatcaaccctactgcctagcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcc 178  Q
    |||| |||||| |||||||  ||||||  ||||||||||| || ||  |||||||||| ||||||||||||||||||||| | | ||||| |||| ||||    
T  29445 taattaaccctgctgcctacgatgcctatgccccctgtgctgcatgacaatctgatacataagggcagggcgaccagtactgccaatccggatcatctcc 29346  T
Q  179 tggacaatctcctctttagtcatctcggc 207  Q
    || || | |||||||||||||||||||||    
T  29345 tgcacgagctcctctttagtcatctcggc 29317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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