View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_43 (Length: 292)
Name: NF0653_low_43
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_43 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 6851423 - 6851154
Alignment:
| Q |
21 |
acatcatcattttcgtctaactgcaaagataatgtatatataaactcttcctaatttataccggagcgtttcatattataaaatctgaaatacaagacta |
120 |
Q |
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| T |
6851423 |
acatcatcattttcgtctgactgcaaaggtaatgtgtatataaactcttcctaatttgtaccggagcgtttcatattataaaatctgaaatacaagacta |
6851324 |
T |
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| Q |
121 |
tgataatggctgcatagaggatgagatccacgtgagaatcatattcacactatgttgttatagcatttattttgacataattgtttccaaaatcactaac |
220 |
Q |
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| T |
6851323 |
tgataatagctgcatagaggatgagatccacgtgagaatcatattcacactatgttgttatagcatttattttgacataattgtttccaaaatcactaa- |
6851225 |
T |
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| Q |
221 |
tctcttttcttagaaatcacgtcaacaagaacaagttaagtgctgagtattgtcctacataaaaccaactgg |
292 |
Q |
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| T |
6851224 |
-ctcttttcttagaaattacgtcaacaagaacaagttaagtgctaagtattgtcctacgtaaaaccaactgg |
6851154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 23710834 - 23710790
Alignment:
| Q |
21 |
acatcatcattttcgtctaactgcaaagataatgtatatataaac |
65 |
Q |
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| T |
23710834 |
acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaac |
23710790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 29355545 - 29355597
Alignment:
| Q |
236 |
atcacgtcaacaagaacaagttaagtgctgagtattgtcctacataaaaccaa |
288 |
Q |
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| T |
29355545 |
atcaagtcaacaagaacacgctaagtgttgagtattgtcctacacaagaccaa |
29355597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 6162350 - 6162306
Alignment:
| Q |
21 |
acatcatcattttcgtctaactgcaaagataatgtatatataaac |
65 |
Q |
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| T |
6162350 |
acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaac |
6162306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 9635368 - 9635412
Alignment:
| Q |
21 |
acatcatcattttcgtctaactgcaaagataatgtatatataaac |
65 |
Q |
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|||||||||||||| ||| | |||||||||||||| ||||||||| |
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| T |
9635368 |
acatcatcattttcatctgagtgcaaagataatgtgtatataaac |
9635412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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