View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_44 (Length: 287)
Name: NF0653_low_44
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 32666782 - 32667046
Alignment:
| Q |
23 |
atcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatag |
122 |
Q |
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| T |
32666782 |
atcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatag |
32666881 |
T |
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| Q |
123 |
taacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggt |
222 |
Q |
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| T |
32666882 |
taacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttattagcaaactcagacataatggt |
32666981 |
T |
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| Q |
223 |
agaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaaaccaagagata |
287 |
Q |
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| T |
32666982 |
agaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaaaccaagagata |
32667046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 37315765 - 37315913
Alignment:
| Q |
136 |
agccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaagga |
235 |
Q |
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|||||| || |||||||||||||||| |||||||| ||||||||| | || | ||| |||| || ||| | ||||||||||| |||| || | ||| |
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| T |
37315765 |
agccaaaattccaaacccttgcatagcaaaaaccgaagctataaacgcgccacgagtctttttgttggcatattcagacataatagtagctgaaagaggg |
37315864 |
T |
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| Q |
236 |
taatcaccaccaattccaagccctaagaagaatctaaagaaaccaagag |
284 |
Q |
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| T |
37315865 |
taatcaccaccaataccaaaacctagccagaatctaaagaaacaaagag |
37315913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 33109402 - 33109294
Alignment:
| Q |
146 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
245 |
Q |
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||||| |||||||||| ||| || ||||| ||||||| |||| ||| | || || ||| ||||||||||||| |||| ||| | ||| |||||||||| |
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| T |
33109402 |
ccaaatccttgcatagcaaacactgcagcgataaaagctcctcgcgtcttcttgttcgcatactcagacataattgtagcagaaagagggtaatcaccac |
33109303 |
T |
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| Q |
246 |
caattccaa |
254 |
Q |
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||||||||| |
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| T |
33109302 |
caattccaa |
33109294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 33115437 - 33115329
Alignment:
| Q |
146 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
245 |
Q |
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||||| |||||||||| ||||| || |||||||| | ||| | ||| ||||||||||| |||||||||| || |||| || | ||| |||||||| | |
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| T |
33115437 |
ccaaaaccttgcatagcgaaaacagccgctataaatgcaccacgagtctttttatttgcatactcagacatgatagtagctgaaagagggtaatcaccgc |
33115338 |
T |
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| Q |
246 |
caattccaa |
254 |
Q |
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||||||||| |
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| T |
33115337 |
caattccaa |
33115329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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