View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_48 (Length: 279)
Name: NF0653_low_48
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46996165 - 46995925
Alignment:
| Q |
1 |
cttctcttcaaaaaaccaacttcatcactaaaccaacaacatttcattgacaaactcaaacactccctttccctcacacttttccatttctatcccctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996165 |
cttctcttcaaaaaaccaacttcatcactaaaccaacagcatttcattgacaaactcaaacactccctttccctcacacttttccatttctatcccctct |
46996066 |
T |
|
| Q |
101 |
caggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcccggagctaaatttattcatgcaacttt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46996065 |
caggtcgtcttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaacttt |
46995966 |
T |
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| Q |
201 |
agatattaccatcaatgatattctctcaccagatgatgtcc |
241 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
46995965 |
agatattaccatcaatgatattctctcaccaattgatgtcc |
46995925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 46981286 - 46981117
Alignment:
| Q |
52 |
aaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgttt |
151 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46981286 |
aaactgaaacactccctttccctcacgcttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctgattcttacactgttt |
46981187 |
T |
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| Q |
152 |
ttgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatattaccatcaatgatat |
221 |
Q |
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| T |
46981186 |
tcgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatatcaccataaatgatat |
46981117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 46998362 - 46998175
Alignment:
| Q |
52 |
aaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgttt |
151 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
46998362 |
aaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgttt |
46998263 |
T |
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| Q |
152 |
ttgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagatgatgt |
239 |
Q |
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| T |
46998262 |
ttgttgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatatcaccatcaatgatattctctcacctgttgatgt |
46998175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46975362 - 46975110
Alignment:
| Q |
1 |
cttctcttcaaaaaaccaacttcatcactaaaccaacaacatttcattga------------caaactcaaacactccctttccctcacacttttccatt |
88 |
Q |
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|
||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||| |||| |
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| T |
46975362 |
cttctcttcaagaaaccaacatcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcacactttttcatt |
46975263 |
T |
|
| Q |
89 |
tctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcccggagctaaatttat |
188 |
Q |
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|||||||| || |||||| |||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||| |||||||| |||||| |
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| T |
46975262 |
attatcccctgtctggtcgtcttgttactaaaaaatctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcggagctagatttat |
46975163 |
T |
|
| Q |
189 |
tcatgcaactttagatattaccatcaatgatattctctcaccagatgatgtcc |
241 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
46975162 |
tcatgcaactttagatatcaccataaatgatattctctcaccagttgatgtcc |
46975110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 47002005 - 47001865
Alignment:
| Q |
101 |
caggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcccggagctaaatttattcatgcaacttt |
200 |
Q |
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|||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
47002005 |
caggtcttcttgttactcaaaaatctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaacttt |
47001906 |
T |
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| Q |
201 |
agatattaccatcaatgatattctctcaccagatgatgtcc |
241 |
Q |
| |
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|||||| ||| |||||| |||||||||||| | |||||||| |
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| T |
47001905 |
agatatcaccgtcaatgttattctctcacctgttgatgtcc |
47001865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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