View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_low_52 (Length: 271)

Name: NF0653_low_52
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_low_52
NF0653_low_52
[»] chr8 (7 HSPs)
chr8 (31-230)||(38313409-38313608)
chr8 (80-230)||(38308864-38309014)
chr8 (80-229)||(38320962-38321111)
chr8 (32-227)||(38306088-38306283)
chr8 (32-225)||(38325664-38325857)
chr8 (32-229)||(38300169-38300366)
chr8 (80-229)||(38316867-38317016)
[»] chr4 (1 HSPs)
chr4 (31-229)||(38850329-38850527)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 38313409 - 38313608
Alignment:
Q  31 cagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313409 cagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttg 38313508  T
Q  131 catctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313509 catctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatg 38313608  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 38308864 - 38309014
Alignment:
Q  80 tttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaa 179  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38308864 tttaaggagtgcattgaaaaggttggtggtgttgatagttctgttcgtttgcatctagacatgtctatgagagtgaactcaacttatttgatgcttcaaa 38308963  T
Q  180 gtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatg 230  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  38308964 gtgctcttaaatatcagcttgcatttgaaagtcttcacttgtatgacgatg 38309014  T

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Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 38320962 - 38321111
Alignment:
Q  80 tttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaa 179  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||  |||||||||||||||||||||||| |||    
T  38320962 tttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaa 38321061  T
Q  180 gtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat 229  Q
    ||||||||||||||  | ||| ||||||||||||||||||||||||||||    
T  38321062 gtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatgatgat 38321111  T

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Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 38306088 - 38306283
Alignment:
Q  32 agagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgc 131  Q
    ||||||||||| |||||||| ||| |||| ||||||||| |||||   |||||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  38306088 agagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaaggttggtggtattgacagttcagttcgcttgc 38306187  T
Q  132 atctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatg 227  Q
    || | || ||||||||||  |||||||||||||||||||||||  | ||||||||||||||||| | || |||||||||| |||||||||||||||    
T  38306188 atatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatg 38306283  T

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Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 38325664 - 38325857
Alignment:
Q  32 agagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgc 131  Q
    |||||||||||  ||||||| |||||||| ||||||||| || |    |||||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  38325664 agagagagcatcatgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaaggttggtggtgtcgatagttccgttcgcttgc 38325763  T
Q  132 atctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatga 225  Q
    |||  ||   |||||||||  ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  38325764 atcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatga 38325857  T

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Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 38300169 - 38300366
Alignment:
Q  32 agagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgc 131  Q
    ||||| |||||  ||||||| |||||||| |||||| || || ||   |||||||||||  ||| ||||||||||||||||||| |||| ||||||||||    
T  38300169 agagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaaggttggtggtgttgattgttccgttcgcttgc 38300268  T
Q  132 atctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat 229  Q
    |||| || | | |||  |||||||||||||||||||  |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  38300269 atctggacacgcctaaaagagtgaactcaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatgat 38300366  T

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Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 38316867 - 38317016
Alignment:
Q  80 tttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaa 179  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| || ||||||| || |||||||||||  |||||||||||||| |||||||| |||    
T  38316867 tttaaggagtgcattgaaaaggttggtggtgttgatagttctgtttgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaa 38316966  T
Q  180 gtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat 229  Q
    ||||||||||||||| || ||  ||||||||| |||||||||||||||||    
T  38316967 gtgctcttaaatatcggcatgtatttgaaagttttcacttgtatgatgat 38317016  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 38850527 - 38850329
Alignment:
Q  31 cagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttg 130  Q
    ||||||||| ||  ||||||| |||||||| ||||||||  || ||   |||||||||||| ||||||||||||||||||||||||||||||||| |||     
T  38850527 cagagagagtatcatgtttgtgaggcattcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcactta 38850428  T
Q  131 catctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat 229  Q
    ||| | ||||| ||||||||  |||  ||||||||| || ||||| |||| ||||||||||| | | |||||||||||||| |||||||||||||||||    
T  38850427 catttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgtatgatgat 38850329  T

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