View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0653_low_53 (Length: 270)

Name: NF0653_low_53
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0653_low_53
NF0653_low_53
[»] chr8 (6 HSPs)
chr8 (22-262)||(24647929-24648169)
chr8 (22-260)||(22531527-22531767)
chr8 (22-260)||(22536212-22536452)
chr8 (25-225)||(17262387-17262587)
chr8 (23-262)||(20379261-20379500)
chr8 (44-132)||(16205631-16205719)
[»] scaffold0810 (1 HSPs)
scaffold0810 (24-258)||(1481-1715)
[»] scaffold0066 (1 HSPs)
scaffold0066 (39-147)||(60797-60905)
[»] scaffold0032 (1 HSPs)
scaffold0032 (25-260)||(679-914)
[»] scaffold0379 (1 HSPs)
scaffold0379 (25-232)||(600-807)
[»] scaffold0004 (1 HSPs)
scaffold0004 (35-262)||(24813-25040)
[»] scaffold0396 (1 HSPs)
scaffold0396 (25-223)||(14737-14935)
[»] chr6 (1 HSPs)
chr6 (78-232)||(18380905-18381059)
[»] scaffold0395 (1 HSPs)
scaffold0395 (55-147)||(13460-13552)
[»] scaffold0676 (1 HSPs)
scaffold0676 (26-225)||(1075-1274)
[»] scaffold0594 (1 HSPs)
scaffold0594 (25-196)||(4632-4803)
[»] chr4 (2 HSPs)
chr4 (48-246)||(19615847-19616045)
chr4 (49-124)||(13581594-13581669)
[»] scaffold0080 (2 HSPs)
scaffold0080 (48-225)||(30418-30595)
scaffold0080 (48-225)||(35883-36060)
[»] chr5 (2 HSPs)
chr5 (35-214)||(23436144-23436323)
chr5 (35-214)||(23447511-23447690)
[»] chr7 (2 HSPs)
chr7 (53-216)||(13134884-13135047)
chr7 (49-124)||(9715327-9715402)
[»] chr3 (3 HSPs)
chr3 (25-214)||(17254535-17254724)
chr3 (25-232)||(18138456-18138661)
chr3 (53-147)||(12955575-12955669)
[»] scaffold0193 (1 HSPs)
scaffold0193 (56-246)||(5855-6045)
[»] chr1 (1 HSPs)
chr1 (25-226)||(36137026-36137227)
[»] chr2 (1 HSPs)
chr2 (48-130)||(18940880-18940962)
[»] scaffold0084 (1 HSPs)
scaffold0084 (114-214)||(40949-41049)
[»] scaffold0120 (2 HSPs)
scaffold0120 (22-59)||(33961-33998)
scaffold0120 (22-59)||(45007-45044)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 24647929 - 24648169
Alignment:
Q  22 catcatcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatc 121  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  24647929 catcatcatctagatactcatttttggtgattgctttcctcttagtcttcctgctttttactactggtaatgctccaccatacatggtctcaggaacatc 24648028  T
Q  122 ttctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattcc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  24648029 ttctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgcagattggaggaaagtcttcc 24648128  T
Q  222 atcaagtttgaaattgcattagacttcttaaggtctgtgct 262  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  24648129 atcaagtttgaaattgcattagacttcttcaggtctgtgct 24648169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 22531767 - 22531527
Alignment:
Q  22 catcatcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatc 121  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||     
T  22531767 catcatcatctagatactcatctttggtgatttctttcctcttagtcttcctgctttttgctactggtaatgctccaccatacatggtctgaggaacata 22531668  T
Q  122 ttctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtc--ttgcttgaagattggaggaaagtatt 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||  ||||||| ||||||||||||||| ||    
T  22531667 ttctagccttatctttttaccagttagagcaaagtattccttgatgaagttcatctgcacttttagagggtcttttgcttgcagattggaggaaagtctt 22531568  T
Q  220 ccatcaagtttgaaattgcattagacttcttaaggtctgtg 260  Q
    ||||||||||||||||||||| ||||| ||| ||| |||||    
T  22531567 ccatcaagtttgaaattgcatcagactccttcaggactgtg 22531527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 22536452 - 22536212
Alignment:
Q  22 catcatcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatc 121  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||     
T  22536452 catcatcatctagatactcatctttggtgatttctttcctcttagtcttcctgctttttgctactggtaatgctccaccatacatggtctgaggaacata 22536353  T
Q  122 ttctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtc--ttgcttgaagattggaggaaagtatt 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||  ||||||| ||||||||||||||| ||    
T  22536352 ttctagccttatctttttaccagttagagcaaagtattccttgatgaagttcatctgcacttttagagggtcttttgcttgcagattggaggaaagtctt 22536253  T
Q  220 ccatcaagtttgaaattgcattagacttcttaaggtctgtg 260  Q
    ||||||||||||||||||||| ||||| ||| ||| |||||    
T  22536252 ccatcaagtttgaaattgcatcagactccttcaggactgtg 22536212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 17262387 - 17262587
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    ||||||| |||||||| | |||||||| |||||||||||| ||||| || || |||||||||||||  |  ||||||||||||||  |||||||||||||    
T  17262387 catcatccaaatactcttctttggtgagtgctttcctcttggtctttctgctctttgctactggtaggggaccaccatacatggttccaggaacatcttc 17262486  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatc 224  Q
     ||||||||||| |||||||| | ||||||||   | ||||| |||||||| || || || ||||  ||||| ||| |||| |||||||||| |||||||    
T  17262487 aagccttatcttcttaccagtcacagcaaagtgatctttgataaagttcatctgaacatcaagagaatcttgtttgcagataggaggaaagtcttccatc 17262586  T
Q  225 a 225  Q
    |    
T  17262587 a 17262587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 20379500 - 20379261
Alignment:
Q  23 atcatcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatct 122  Q
    ||||||| | ||||||||||  || |||| |||||||||||| || ||| | |||||||||||||| || || |||||||||||||| ||||||||||||    
T  20379500 atcatcacccaaatactcatcctttgtgagtgctttcctctttgttttcgtactttttgctactggcaaagcaccaccatacatggtttcaggaacatct 20379401  T
Q  123 tctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattcca 222  Q
    || || || ||||| || | |||||  |||||||   | || ||||||||||| || || || || || ||||| ||| | ||||||||||||| |||||    
T  20379400 tcaagtctgatcttcttgctagttactgcaaagtgctcttttatgaagttcatctgaacatccaggggatcttgtttgcatattggaggaaagtcttcca 20379301  T
Q  223 tcaagtttgaaattgcattagacttcttaaggtctgtgct 262  Q
    |||   | || ||||||| ||||| ||| | |||||||||    
T  20379300 tcataatggacattgcatcagactccttcaagtctgtgct 20379261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 16205631 - 16205719
Alignment:
Q  44 tttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagcctta 132  Q
    |||||||||||| ||||||||||||||||| || || || ||| |||| ||||||||||||||  ||||| |||||||||| |||||||    
T  16205631 tttggtgattgccttcctcttagtcttcctgctcttggccactagtaaggctccaccatacatattctcaagaacatcttccagcctta 16205719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 258
Target Start/End: Complemental strand, 1715 - 1481
Alignment:
Q  24 tcatcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatctt 123  Q
    |||||||||| ||| |||| |||  | |||||||||||||| |||||  | ||||||||||||  ||| | |||||||||||||||||||| ||||||||    
T  1715 tcatcatctagatattcatcttttataattgctttcctcttggtctttttgctttttgctacttctaaggttccaccatacatggtctcagaaacatctt 1616  T
Q  124 ctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccat 223  Q
    | |||||||||||| |||||||    | ||||| |  |||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  1615 ccagccttatctttgtaccagtcgttggaaagtgttgcttgataaagttcatctgcacttccagagggtcttgcttgcagattggaggaaagtcttccat 1516  T
Q  224 caagtttgaaattgcattagacttcttaaggtctg 258  Q
    ||| ||||||||||||| ||||| ||| |||||||    
T  1515 caaatttgaaattgcatcagactccttcaggtctg 1481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 60905 - 60797
Alignment:
Q  39 tcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttt 138  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  60905 tcatctttggtgattgctttcctcttagtcttcctgctttttactactggtaatgctctaccatacatgatctcaggaacatcatctagccttatctttt 60806  T
Q  139 taccagtta 147  Q
    |||||||||    
T  60805 taccagtta 60797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 914 - 679
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    ||||||| | ||||||||  | ||||| |||||||||||| || ||||| || ||||||| ||| || ||||||||||||||||||||| ||||||||||    
T  914 catcatcaagatactcatcctcggtgagtgctttcctctttgttttcctgctctttgctaatggcaaggctccaccatacatggtctcaagaacatcttc 815  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatc 224  Q
    ||||||||||||  ||| |||||  ||||||| | | |||||||||||||| || ||||| |  |||||||||||| |||||||||||||||  ||||||    
T  814 tagccttatcttcgtacaagttaacgcaaagtgttctttgatgaagttcatctgaacttccaaggggtcttgcttgcagattggaggaaagtcatccatc 715  T
Q  225 aagtttgaaattgcattagacttcttaaggtctgtg 260  Q
    | ||| || | |||||| |||| ||| | |||||||    
T  714 aggttggacaatgcattggactccttcaagtctgtg 679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 600 - 807
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    ||||||||||||| |||| ||| | || ||||||||| || |  ||||| || ||||||||  |||| ||||||||||||||||||||||||||||||||    
T  600 catcatctaaatagtcatctttagagagtgctttcctatttgatttcctgctctttgctacatgtaaggctccaccatacatggtctcaggaacatcttc 699  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatc 224  Q
     |||||||||||| ||||||| |  ||||||| |  |||||| ||||| || || ||||  || |||| ||||||| ||||||||||||||| |||||||    
T  700 cagccttatctttgtaccagtcattgcaaagtgttgcttgataaagtttatctgaactttcagggggttttgcttgcagattggaggaaagtcttccatc 799  T
Q  225 aagtttga 232  Q
    ||||||||    
T  800 aagtttga 807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 262
Target Start/End: Complemental strand, 25040 - 24813
Alignment:
Q  35 atactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatc 134  Q
    ||||||||  ||||||| |||||||||||| || ||||| || ||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||    
T  25040 atactcatcgttggtgagtgctttcctctttgttttcctgctctttgctactggcaaggctccaccatacatggtcttaggaacatcttccagccttatc 24941  T
Q  135 tttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatcaagtttgaaa 234  Q
    ||  ||| |||||  ||||||| | | ||||||||||| || || |||||||  |||||||||||| |||||||||| |||| || ||| |  || || |    
T  24940 ttcgtacaagttaatgcaaagtgttctttgatgaagtttatctgaacttctaaggggtcttgcttgcagattggaggtaagtctttcattagattggaca 24841  T
Q  235 ttgcattagacttcttaaggtctgtgct 262  Q
    |||||| ||||| ||| | |||||||||    
T  24840 ttgcatcagactccttcaagtctgtgct 24813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 14935 - 14737
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    ||||||| ||||| |||| ||| |||| |||||||||||| |  ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||    
T  14935 catcatccaaatattcatcttttgtgagtgctttcctctttgatttcctgctctttgctactggcaaggctccaccatacatggtctcaggaacatcttc 14836  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccat 223  Q
     |||||||||||  | |||||||  ||||||| | | |||||||||||||| || ||||| || | |||||||||| | |||| |||||||| ||||||    
T  14835 cagccttatcttcgtgccagttaatgcaaagtgttctttgatgaagttcatctgaacttccagggagtcttgcttgcatattgaaggaaagtcttccat 14737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 18380905 - 18381059
Alignment:
Q  78 tttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatat 177  Q
    |||||||||||||| |||||||| |||||||||| ||||| |||||| |||||||||||| ||| ||| |  ||||| | |  |||||| ||||||||||    
T  18380905 tttgctactggtaaggctccaccgtacatggtcttaggaatatcttccagccttatctttgtactagtcattgcaaactgttgcttgataaagttcatat 18381004  T
Q  178 gcacttctagagggtcttgcttgaagattggaggaaagtattccatcaagtttga 232  Q
    | |||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  18381005 gaacttctagagggtcctgcttgaatattggaggaaagtcttccatcaagtttga 18381059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 13552 - 13460
Alignment:
Q  55 ctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagtta 147  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  13552 ctttcctcttagtcttcctactttttgctacttgtaatgctctaccatacatggtcttaggaacatcttctagccttatctttttactagtta 13460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 1075 - 1274
Alignment:
Q  26 atcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttct 125  Q
    |||||| |||||||| |  || |||| |||| ||||||| || ||||| || |||| || ||| || || |||||||||||||||||||||||||||||     
T  1075 atcatccaaatactcttcctttgtgagtgctatcctctttgttttcctgctctttgatagtggcaaggccccaccatacatggtctcaggaacatcttcc 1174  T
Q  126 agccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatca 225  Q
    |||||||||||  ||||| |||  ||||||| | | |||||||||||||| || ||||| || | |||||||||| |||||||| |||||| ||||||||    
T  1175 agccttatcttcgtaccacttaatgcaaagtgttctttgatgaagttcatctgaacttcgagggagtcttgcttgcagattggacgaaagtcttccatca 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 4803 - 4632
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    ||||||| | |||||| | |||||||| |||||||||||| || ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||    
T  4803 catcatccagatactcttctttggtgagtgctttcctctttgttttcctactctttgctactggcaaggctccaccatacatggtctcaggaacatcttc 4704  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttg 196  Q
     | |||||||||  |||||||||  ||||||| | |  ||||||||||||| || ||||  || ||||||||    
T  4703 caaccttatcttagtaccagttattgcaaagtgttctctgatgaagttcatttgaactttcagggggtcttg 4632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 19616045 - 19615847
Alignment:
Q  48 gtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagtta 147  Q
    |||| |||||||||||| |||||||| |||||||||||||| || || |||||||| ||||| |||||||||||||| ||||| ||||| |||||||||     
T  19616045 gtgagtgctttcctctttgtcttcctgctttttgctactggcaaagcaccaccatatatggtttcaggaacatcttcaagcctgatcttcttaccagttg 19615946  T
Q  148 gagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatcaagtttgaaattgcattagact 246  Q
      |||||||   | || ||||||||||| || || || || || ||||| ||| ||||||||||||||| ||||||||   | || |||||||||||||    
T  19615945 ttgcaaagtggtcttttatgaagttcatctgaacatccaggggatcttgtttgcagattggaggaaagtcttccatcagaatggacattgcattagact 19615847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13581669 - 13581594
Alignment:
Q  49 tgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    |||| |||||||||||||||||||| || ||||| ||||| |   ||||||||||||| || ||||| ||||||||    
T  13581669 tgatagctttcctcttagtcttcctgctctttgcaactggaagaactccaccatacatagtttcaggcacatcttc 13581594  T

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Target: scaffold0080 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 30418 - 30595
Alignment:
Q  48 gtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagtta 147  Q
    |||| |||||||||||| |  ||||| || ||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |    
T  30418 gtgagtgctttcctctttgatttcctactctttgctactgccaaggctccaccatacatggtctcaggaacatcttccagccttatctttgtaccagtca 30517  T
Q  148 gagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatca 225  Q
      ||||||| |   ||||| |||||||| || ||||| || | |||||| ||| | ||||||||||||| ||||||||    
T  30518 ttgcaaagtgttgtttgataaagttcatctgaacttccagggagtcttgattgcatattggaggaaagtcttccatca 30595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 35883 - 36060
Alignment:
Q  48 gtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagtta 147  Q
    |||| |||||||||||| |  ||||| || ||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |    
T  35883 gtgagtgctttcctctttgatttcctactctttgctactgccaaggctccaccatacatggtctcaggaacatcttccagccttatctttgtaccagtca 35982  T
Q  148 gagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatca 225  Q
      ||||||| |   ||||| |||||||| || ||||| || | |||||| ||| | ||||||||||||| ||||||||    
T  35983 ttgcaaagtgttgtttgataaagttcatctgaacttccagggagtcttgattgcatattggaggaaagtcttccatca 36060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 23436323 - 23436144
Alignment:
Q  35 atactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatc 134  Q
    |||||| | |||||||| ||||||||| || ||||| || || ||||||| ||| || || |||||||||||| | |||||||||||||| |||||||||    
T  23436323 atactcttctttggtgagtgctttccttttggtctttctgctctttgctattggcaaggcaccaccatacatgttttcaggaacatcttcaagccttatc 23436224  T
Q  135 tttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaa 214  Q
    || |||||||||   |||||||   | |||||| |||||||||| || || ||||| ||||| ||| |||||||||||||    
T  23436223 ttcttaccagttgttgcaaagtgatctttgatgtagttcatatgaacatcaagaggatcttgtttgcagattggaggaaa 23436144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 23447690 - 23447511
Alignment:
Q  35 atactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatc 134  Q
    |||||| | |||||||| ||||||||| || ||||| || || ||||||| ||| || || |||||||||||| | |||||||||||||| |||||||||    
T  23447690 atactcttctttggtgagtgctttccttttggtctttctgctctttgctattggcaaggcaccaccatacatgttttcaggaacatcttcaagccttatc 23447591  T
Q  135 tttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaa 214  Q
    || |||||||||   |||||||   | |||||| |||||||||| || || ||||| ||||| ||| |||||||||||||    
T  23447590 ttcttaccagttgttgcaaagtgatctttgatgtagttcatatgaacatcaagaggatcttgtttgcagattggaggaaa 23447511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 13135047 - 13134884
Alignment:
Q  53 tgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagttagagca 152  Q
    |||||||||||| |  ||||| || ||||||||||| || |||||||||||||||||||| ||||||||||| || |||||| || ||||||| |   ||    
T  13135047 tgctttcctctttgatttcctgctctttgctactggcaaggctccaccatacatggtctcgggaacatcttccagtcttatccttgtaccagtcattaca 13134948  T
Q  153 aagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagt 216  Q
    |||| |  |||||| ||||| || || ||||| || |||||||||||| | |||||||||||||    
T  13134947 aagtgttgcttgataaagtttatttgaacttccagggggtcttgcttgcatattggaggaaagt 13134884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 9715402 - 9715327
Alignment:
Q  49 tgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    |||| |||||||||||||||||||| || ||||| ||||| |   ||||||||||||| || ||||| ||||||||    
T  9715402 tgatagctttcctcttagtcttcctgctctttgcaactggaagaactccaccatacatagtttcaggcacatcttc 9715327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 17254724 - 17254535
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    ||||| ||| |||||||  ||| |||| ||||||||||||  |||| || || ||||||||||| || || |||||||||||||| ||| ||||||||||    
T  17254724 catcacctagatactcaccttttgtgagtgctttcctcttgatctttctgctctttgctactggcaaggcaccaccatacatggtttcaagaacatcttc 17254625  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaa 214  Q
     ||||| ||||| |||| |||||  |||||||   | || ||||||||||| || || || ||||| ||||| ||| |||||||||||||    
T  17254624 aagcctaatcttcttactagttactgcaaagtgatctttaatgaagttcatctgaacatcaagaggatcttgtttgcagattggaggaaa 17254535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 18138661 - 18138456
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    |||| ||||| || |||| |||| |||| ||||||||  |||| ||||| || || || |||||||  ||||||||||||||||||||||| ||||||||    
T  18138661 catcgtctaagtagtcatctttgctgatagctttcct--tagttttcctgctcttagccactggtagagctccaccatacatggtctcaggcacatcttc 18138564  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatc 224  Q
     ||  || ||||  | || |||   |||||||   |  ||||| ||||||| || || || ||||| ||||||||| |||| |||||||||| |||||||    
T  18138563 cagatttgtcttcgtgcctgttgatgcaaagtgatctatgatgtagttcatctggacatcaagaggatcttgcttgcagatgggaggaaagtcttccatc 18138464  T
Q  225 aagtttga 232  Q
    ||||||||    
T  18138463 aagtttga 18138456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 12955669 - 12955575
Alignment:
Q  53 tgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagtta 147  Q
    |||||||||||| |||||||| | |||| |||||||||| || |||  |||||| || ||| |||||| ||| ||||| ||||| ||||||||||    
T  12955669 tgctttcctctttgtcttcctacctttttctactggtaaggcaccataatacatagtttcaagaacatattccagcctaatcttcttaccagtta 12955575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 246
Target Start/End: Original strand, 5855 - 6045
Alignment:
Q  56 tttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagccttatctttttaccagttagagcaaag 155  Q
    ||||||||| ||||| ||||| |||| |||| | || ||||||||||||| |||||||||||||| ||| |||||||||||  |||||| |   ||||||    
T  5855 tttcctcttggtctttctcctatttgatactagcaaggctccaccatacacggtctcaggaacatattccagccttatcttcgtaccaggtgttgcaaag 5954  T
Q  156 tataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatcaagtttgaaattgcattagact 246  Q
    |   | ||||||||||| || || || || ||||| ||||||||| |||| |||||||| | |||||||| | | || ||||||| |||||    
T  5955 tgatctttgatgaagttaatttgaacatcaagaggatcttgcttgcagataggaggaaactcttccatcaggatggacattgcatcagact 6045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 36137026 - 36137227
Alignment:
Q  25 catcatctaaatactcatttttggtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttc 124  Q
    ||||||| | ||||||||  ||||||| |||||| ||||| |||||||| |  || |||||||| |||||||| |||||||| || ||||||||||||||    
T  36137026 catcatccagatactcatcattggtgagtgcttttctcttggtcttcctgcacttggctactggcaatgctcctccatacattgtttcaggaacatcttc 36137125  T
Q  125 tagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaaagtattccatc 224  Q
     ||||||| |||| | ||||||   ||||| |   | ||||| |||||||| || || || ||||| || |||||| | ||||||||||||| || ||||    
T  36137126 aagccttaactttatgccagttgttgcaaaatgatctttgataaagttcatctgaacatcaagaggatcctgcttgcatattggaggaaagtttttcatc 36137225  T
Q  225 aa 226  Q
    ||    
T  36137226 aa 36137227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 18940880 - 18940962
Alignment:
Q  48 gtgattgctttcctcttagtcttcctcctttttgctactggtaatgctccaccatacatggtctcaggaacatcttctagcct 130  Q
    ||||||||||| || || | |||||| || ||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  18940880 gtgattgcttttctttttgacttcctgctctttgctactggcaaagctcctccatacatgttctcaggaacatcttcaagcct 18940962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 40949 - 41049
Alignment:
Q  114 ggaacatcttctagccttatctttttaccagttagagcaaagtataccttgatgaagttcatatgcacttctagagggtcttgcttgaagattggaggaa 213  Q
    ||||||||||  |||||||||||  ||| ||||   |||||||   |||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||    
T  40949 ggaacatctttcagccttatcttcgtactagttgttgcaaagtgatccttgatgaagttcatatgcacatcaagaggatcttgtttgcagattggaggaa 41048  T
Q  214 a 214  Q
    |    
T  41049 a 41049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 33998 - 33961
Alignment:
Q  22 catcatcatctaaatactcatttttggtgattgctttc 59  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  33998 catcatcatctagatactcatctttggtgattgctttc 33961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 45007 - 45044
Alignment:
Q  22 catcatcatctaaatactcatttttggtgattgctttc 59  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  45007 catcatcatctagatactcatctttggtgattgctttc 45044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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