View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_57 (Length: 239)
Name: NF0653_low_57
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_57 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 33270310 - 33270490
Alignment:
| Q |
59 |
agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta |
158 |
Q |
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| T |
33270310 |
agctgctgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta |
33270409 |
T |
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| Q |
159 |
aattaatcattcaatctatacatttaaaagaaaattcacagtttctaaattgccacccgagagaatgaaacctgagacctt |
239 |
Q |
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| T |
33270410 |
aattaatcattcaatctatacatttaaaagaaaattaacagttttcaaattgccaccggagagaatgaaacctgagacctt |
33270490 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 39751692 - 39751605
Alignment:
| Q |
61 |
ctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg |
148 |
Q |
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| T |
39751692 |
ctgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg |
39751605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 25707148 - 25707237
Alignment:
| Q |
59 |
agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg |
148 |
Q |
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| T |
25707148 |
agctgctgaagaccaataatgattgctgctcctgccatgaatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctg |
25707237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 34662111 - 34662170
Alignment:
| Q |
68 |
agaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaa |
127 |
Q |
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| T |
34662111 |
agaccaatcaagatggctgcacctgccataaatcctacaagtgcagcatgtgataaaaaa |
34662170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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