View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_63 (Length: 214)
Name: NF0653_low_63
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 39587180 - 39587382
Alignment:
| Q |
1 |
gcacagttacaagatgatgataagtctttcactattctaataatcccttgagatcaaaatgtttttgtaaatatgaacaaatattaaaaactttcacctg |
100 |
Q |
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| T |
39587180 |
gcacagttacaagatgataataattctttcactattctaataatcccttgagatcaaaatgtttttgtaaatatgaacaaatattaaaaactttcacctg |
39587279 |
T |
|
| Q |
101 |
aacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcagcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587280 |
aacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcagcaaca |
39587379 |
T |
|
| Q |
201 |
gct |
203 |
Q |
| |
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||| |
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|
| T |
39587380 |
gct |
39587382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 39544840 - 39544951
Alignment:
| Q |
92 |
tttcacctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaaca |
191 |
Q |
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|||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||| |
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| T |
39544840 |
tttcacctgagcagcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaaca |
39544939 |
T |
|
| Q |
192 |
tcagcaacagct |
203 |
Q |
| |
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||||||| |||| |
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| T |
39544940 |
tcagcaaaagct |
39544951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 39554158 - 39554265
Alignment:
| Q |
96 |
acctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcag |
195 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
39554158 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39554257 |
T |
|
| Q |
196 |
caacagct |
203 |
Q |
| |
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||| |||| |
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|
| T |
39554258 |
caaaagct |
39554265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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