View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0653_low_9 (Length: 579)
Name: NF0653_low_9
Description: NF0653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0653_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 41523544 - 41523058
Alignment:
| Q |
1 |
ttttcctatggaaatggaagtagcgttgacatgaactgtaaaacctcaaataaattttggttctagggaggtttttcttcgccatatgcaatggacaaga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
41523544 |
ttttcctatggaaatggaagtagtgttgacatgaactgtaaaacctcaaataaattttggttctagggaggtttttcttcaccatatgcaattgacaaga |
41523445 |
T |
|
| Q |
101 |
catgtattgactcagttgcagaacaaacatgctgagaaagctactttggaagataaattaatgaggcgaagcacaaatttcagccttgagacagggctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41523444 |
catgtattgactcagttgcagaacaaacatgctgagaaagctactttggaagataaattaatgaggcgaagcactaatttcagccttgagacagggctgc |
41523345 |
T |
|
| Q |
201 |
gctccaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattgtagaccaactgtgtcatgattgttggtcaaggc |
300 |
Q |
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| T |
41523344 |
gcttcaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattgtagaccaattgtgtcatgattgttggtcaaggc |
41523245 |
T |
|
| Q |
301 |
tagaagactcaagaaagtggttgagatgccagggtctagtggtaggtagttattcagtagtgtcgtgaacgggtagtgaatgagagtggtaatgtagggg |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41523244 |
tagaaggctcaagaaagtggttgagatgccagggtctagtgggagctagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtagggg |
41523145 |
T |
|
| Q |
401 |
aggttacttcgtacctagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttaagtat |
487 |
Q |
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| T |
41523144 |
aggttacttcgtacctagaaagagatggcgtgaatgatcattctttcgacctctttaggaacttatctcttggaaagtgttaagtat |
41523058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 191 - 487
Target Start/End: Complemental strand, 41514390 - 41514094
Alignment:
| Q |
191 |
acagggctgtgctccaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattgtagaccaactgtgtcatgattgt |
290 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
41514390 |
acagggctgtgcttcaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattctagaccaattgtgtcatgattgt |
41514291 |
T |
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| Q |
291 |
tggtcaaggctagaagactcaagaaagtggttgagatgccagggtctagtggtaggtagttattcagtagtgtcgtgaacgggtagtgaatgagagtggt |
390 |
Q |
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| T |
41514290 |
tggtcaaggctagaaggctcaagaaagtggttgagatgccagggtctagtgggagctagttattcagtagtgtcgtgaacgagtagtgaatgagagtggt |
41514191 |
T |
|
| Q |
391 |
aatgtaggggaggttacttcgtacctagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttaagtat |
487 |
Q |
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| T |
41514190 |
aatgtaggggaggttacttcgtacctagaaagagatggtgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttgagtat |
41514094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41514438 - 41514390
Alignment:
| Q |
1 |
ttttcctatggaaatggaagtagcgttgacatgaactgtaaaacctcaa |
49 |
Q |
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| T |
41514438 |
ttttcctatggaaatggaagtagcgttgacatgaactgtaaaacctcaa |
41514390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 466
Target Start/End: Complemental strand, 41508041 - 41507873
Alignment:
| Q |
302 |
agaagactcaagaaagtggttgagatgccagggtcta----gtggtaggtagttattcagtagtgtcgtgaacgggtagtgaatgagagtggtaatgtag |
397 |
Q |
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||||| |||||||||||||||| ||| ||||||||| |||| || |||||||| ||||| ||| ||| | ||| |||||||||||||| ||| || |
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| T |
41508041 |
agaaggctcaagaaagtggttgttatggcagggtctaatgggtgggagttagttatttagtagcatcgagaaagagtactgaatgagagtggtgatgcag |
41507942 |
T |
|
| Q |
398 |
gggaggttacttcgtacctagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttat |
466 |
Q |
| |
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| T |
41507941 |
gggaggttacttagaatttagaaacagatgttgtggatgattatccttttttcctctttaggagcttat |
41507873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 409
Target Start/End: Complemental strand, 41517626 - 41517523
Alignment:
| Q |
310 |
caagaaagtggttgagatgccagggtctagtggtagg----tagttattcagtagtgtcgtgaacgggtagtgaatgagagtggtaatgtaggggaggtt |
405 |
Q |
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|||||||||||||| ||| ||||||||||||| ||| |||||||| || || |||| ||| ||| |||||||||||||| ||| |||||||||| |
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| T |
41517626 |
caagaaagtggttgttatggcagggtctagtgggagggagttagttatttagcagcgtcgagaaatagtactgaatgagagtggttatgcaggggaggtt |
41517527 |
T |
|
| Q |
406 |
actt |
409 |
Q |
| |
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|||| |
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| T |
41517526 |
actt |
41517523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 2438645 - 2438703
Alignment:
| Q |
302 |
agaagactcaagaaagtggttgagatgccagggtctagtggtaggtagttattcagtag |
360 |
Q |
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||||| ||||| ||||||||||||||| |||||||| || | || |||||||||||||| |
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| T |
2438645 |
agaaggctcaataaagtggttgagatggcagggtcttgtaggagttagttattcagtag |
2438703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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