View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0654_high_2 (Length: 253)

Name: NF0654_high_2
Description: NF0654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0654_high_2
NF0654_high_2
[»] chr2 (14 HSPs)
chr2 (1-230)||(23011407-23011636)
chr2 (4-212)||(29027742-29027950)
chr2 (34-218)||(20174314-20174497)
chr2 (4-115)||(29849670-29849781)
chr2 (93-226)||(32085693-32085826)
chr2 (13-229)||(25885116-25885332)
chr2 (150-214)||(31804697-31804761)
chr2 (150-200)||(25887694-25887744)
chr2 (150-200)||(27908909-27908959)
chr2 (150-215)||(29719023-29719088)
chr2 (144-191)||(17635559-17635606)
chr2 (4-51)||(23933298-23933345)
chr2 (150-194)||(25196275-25196319)
chr2 (160-200)||(26667555-26667595)
[»] chr5 (16 HSPs)
chr5 (12-229)||(34487861-34488078)
chr5 (1-185)||(24265114-24265298)
chr5 (1-185)||(24341745-24341929)
chr5 (53-214)||(22755765-22755926)
chr5 (140-226)||(24266740-24266826)
chr5 (140-226)||(24343371-24343457)
chr5 (161-226)||(18208054-18208119)
chr5 (4-56)||(15375602-15375654)
chr5 (4-56)||(24659695-24659747)
chr5 (5-51)||(20563799-20563845)
chr5 (150-192)||(20744461-20744503)
chr5 (150-200)||(23388646-23388696)
chr5 (4-56)||(17432214-17432266)
chr5 (174-226)||(24661993-24662045)
chr5 (5-51)||(24140819-24140865)
chr5 (150-200)||(24659771-24659821)
[»] chr7 (31 HSPs)
chr7 (12-226)||(7318505-7318719)
chr7 (4-195)||(17152795-17152986)
chr7 (1-218)||(3734835-3735052)
chr7 (4-193)||(15869860-15870049)
chr7 (34-226)||(6013823-6014014)
chr7 (34-226)||(3190736-3190928)
chr7 (81-226)||(4986824-4986970)
chr7 (81-226)||(4990922-4991068)
chr7 (12-226)||(10586679-10586892)
chr7 (12-88)||(9574762-9574838)
chr7 (4-127)||(1586294-1586417)
chr7 (64-214)||(16297547-16297696)
chr7 (48-214)||(17829811-17829976)
chr7 (2-88)||(18202853-18202939)
chr7 (1-51)||(17190879-17190929)
chr7 (4-200)||(39272819-39273016)
chr7 (161-218)||(1584439-1584496)
chr7 (4-195)||(8978649-8978841)
chr7 (150-202)||(2564074-2564126)
chr7 (163-223)||(7397375-7397435)
chr7 (144-200)||(8053845-8053901)
chr7 (150-194)||(16365971-16366015)
chr7 (4-51)||(16058680-16058727)
chr7 (3-37)||(6013928-6013962)
chr7 (106-172)||(8313146-8313212)
chr7 (4-54)||(13289092-13289142)
chr7 (150-200)||(20582516-20582566)
chr7 (174-226)||(4986762-4986815)
chr7 (174-226)||(4990860-4990913)
chr7 (144-200)||(4819100-4819156)
chr7 (150-194)||(11803334-11803378)
[»] chr6 (24 HSPs)
chr6 (4-214)||(28933304-28933514)
chr6 (3-227)||(21688496-21688719)
chr6 (1-214)||(21907678-21907892)
chr6 (12-226)||(8241503-8241715)
chr6 (12-214)||(19244819-19245021)
chr6 (64-214)||(4339977-4340127)
chr6 (20-212)||(6630352-6630544)
chr6 (4-119)||(11177272-11177387)
chr6 (5-224)||(22568071-22568292)
chr6 (4-223)||(15466599-15466818)
chr6 (140-226)||(9898744-9898830)
chr6 (144-200)||(27124282-27124338)
chr6 (4-51)||(11136284-11136331)
chr6 (3-51)||(23009074-23009122)
chr6 (3-51)||(23779242-23779290)
chr6 (1-56)||(9517118-9517173)
chr6 (4-46)||(17382380-17382422)
chr6 (1-51)||(17826808-17826858)
chr6 (1-47)||(27124209-27124255)
chr6 (145-214)||(14079243-14079312)
chr6 (150-202)||(9838610-9838662)
chr6 (160-216)||(24215715-24215771)
chr6 (138-218)||(24252019-24252099)
chr6 (145-189)||(27737475-27737519)
[»] chr1 (33 HSPs)
chr1 (12-226)||(24281505-24281719)
chr1 (1-210)||(33190923-33191132)
chr1 (4-200)||(25404142-25404338)
chr1 (5-201)||(14779805-14780001)
chr1 (20-226)||(25960829-25961034)
chr1 (4-226)||(18100659-18100882)
chr1 (12-194)||(21449342-21449524)
chr1 (4-127)||(16179335-16179458)
chr1 (71-214)||(28008348-28008491)
chr1 (140-223)||(17121284-17121367)
chr1 (81-226)||(16112052-16112197)
chr1 (34-195)||(24214795-24214956)
chr1 (150-214)||(12012606-12012670)
chr1 (104-211)||(9787624-9787731)
chr1 (64-214)||(15807726-15807876)
chr1 (159-224)||(21847813-21847878)
chr1 (150-214)||(17359406-17359470)
chr1 (150-200)||(18736038-18736088)
chr1 (1-50)||(16916610-16916659)
chr1 (4-56)||(15543681-15543733)
chr1 (150-202)||(15543757-15543809)
chr1 (4-48)||(18826031-18826075)
chr1 (12-60)||(21334438-21334486)
chr1 (160-200)||(25403890-25403930)
chr1 (150-200)||(29242765-29242815)
chr1 (150-195)||(9401769-9401814)
chr1 (151-192)||(22623159-22623200)
chr1 (4-56)||(15160183-15160235)
chr1 (166-214)||(15813350-15813398)
chr1 (150-194)||(17610046-17610090)
chr1 (4-60)||(18528905-18528961)
chr1 (150-194)||(18825910-18825954)
chr1 (67-127)||(32382717-32382777)
[»] scaffold0005 (2 HSPs)
scaffold0005 (12-212)||(167952-168152)
scaffold0005 (5-38)||(168029-168062)
[»] chr4 (21 HSPs)
chr4 (12-212)||(14649140-14649340)
chr4 (4-201)||(22357177-22357373)
chr4 (21-218)||(19092534-19092731)
chr4 (4-226)||(5679436-5679659)
chr4 (34-193)||(13909120-13909279)
chr4 (64-214)||(17672236-17672386)
chr4 (5-195)||(8969377-8969567)
chr4 (4-115)||(22173195-22173306)
chr4 (12-212)||(19929327-19929527)
chr4 (4-194)||(7582562-7582753)
chr4 (12-102)||(17275909-17275999)
chr4 (12-56)||(17710086-17710130)
chr4 (144-214)||(17336919-17336989)
chr4 (150-195)||(17710017-17710062)
chr4 (4-51)||(11253421-11253468)
chr4 (150-192)||(17106858-17106900)
chr4 (150-200)||(19492502-19492552)
chr4 (5-38)||(14649230-14649263)
chr4 (11-60)||(19492433-19492482)
chr4 (4-48)||(11933828-11933872)
chr4 (150-214)||(19636398-19636462)
[»] chr3 (23 HSPs)
chr3 (12-226)||(17156021-17156234)
chr3 (64-200)||(38083814-38083950)
chr3 (58-229)||(12805593-12805764)
chr3 (140-223)||(31285798-31285881)
chr3 (64-214)||(21325582-21325732)
chr3 (104-223)||(8143846-8143966)
chr3 (13-226)||(2723499-2723705)
chr3 (5-51)||(19167781-19167827)
chr3 (160-200)||(8882921-8882961)
chr3 (4-47)||(4650613-4650656)
chr3 (4-62)||(8765479-8765537)
chr3 (152-194)||(20429964-20430006)
chr3 (150-211)||(7494906-7494967)
chr3 (2-51)||(27413563-27413612)
chr3 (12-60)||(934369-934417)
chr3 (150-214)||(21302162-21302226)
chr3 (160-214)||(7478155-7478209)
chr3 (150-200)||(12754711-12754761)
chr3 (151-192)||(41508632-41508673)
chr3 (71-127)||(12373674-12373730)
chr3 (150-202)||(17438221-17438273)
chr3 (154-194)||(19171658-19171698)
chr3 (160-224)||(21825672-21825736)
[»] scaffold0024 (1 HSPs)
scaffold0024 (12-226)||(39816-40029)
[»] chr8 (20 HSPs)
chr8 (20-226)||(14528371-14528576)
chr8 (12-214)||(19786976-19787178)
chr8 (140-223)||(24645073-24645156)
chr8 (5-118)||(7983909-7984021)
chr8 (21-88)||(25182125-25182192)
chr8 (161-214)||(13314795-13314848)
chr8 (65-214)||(34497358-34497507)
chr8 (150-214)||(26394490-26394554)
chr8 (150-200)||(24723401-24723451)
chr8 (147-200)||(24110457-24110510)
chr8 (147-200)||(24269855-24269908)
chr8 (4-48)||(16404288-16404332)
chr8 (4-56)||(17101620-17101672)
chr8 (6-56)||(24723307-24723357)
chr8 (150-195)||(24114074-24114119)
chr8 (166-215)||(25182234-25182283)
chr8 (4-85)||(37528403-37528484)
chr8 (4-56)||(18448256-18448308)
chr8 (4-48)||(19264418-19264462)
chr8 (150-202)||(29382152-29382204)
[»] scaffold0102 (1 HSPs)
scaffold0102 (48-195)||(35800-35947)
[»] scaffold0062 (1 HSPs)
scaffold0062 (5-210)||(42874-43078)
[»] scaffold0622 (1 HSPs)
scaffold0622 (160-226)||(958-1024)
[»] scaffold0008 (1 HSPs)
scaffold0008 (20-212)||(55107-55297)
[»] scaffold0263 (1 HSPs)
scaffold0263 (1-56)||(15980-16035)
[»] scaffold0043 (1 HSPs)
scaffold0043 (140-223)||(89637-89720)
[»] scaffold0427 (1 HSPs)
scaffold0427 (152-226)||(2612-2686)
[»] scaffold0016 (1 HSPs)
scaffold0016 (150-200)||(3772-3822)
[»] scaffold0034 (1 HSPs)
scaffold0034 (6-51)||(76790-76835)
[»] scaffold0134 (1 HSPs)
scaffold0134 (150-214)||(11404-11468)
[»] scaffold0001 (1 HSPs)
scaffold0001 (150-214)||(81614-81678)
[»] scaffold0638 (1 HSPs)
scaffold0638 (157-192)||(619-654)
[»] scaffold0671 (1 HSPs)
scaffold0671 (4-48)||(818-862)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23011407 - 23011636
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatc 100  Q
    |||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23011407 cctgcacgtatggatcactgttcgatcaacagatgcagttagccatcaaagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatc 23011506  T
Q  101 actgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23011507 accgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaaaaaaaataaacgcaacat 23011606  T
Q  201 gaatggtatttaattccagcaaaatagatg 230  Q
    ||||||||||||||||||||||||||||||    
T  23011607 gaatggtatttaattccagcaaaatagatg 23011636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 29027950 - 29027742
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| |||||| ||| | |||| ||| |||||||||||||| ||| |||| ||||| |||||||||||||||||||||| || || ||   ||||      
T  29027950 gcacgtaaggatcatcgtacaatcagcaggtgcagttagccatcagagggataaacctatatcaaccgagatagtatagacctcgcacgtattgatcatc 29027851  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaa 203  Q
    |||||||||||||||| ||||||| |  ||||| | |||||| || |||||| | ||||||||| |||| |||||||||||||| ||||||| |||||||    
T  29027850 gtgcgatcaacaggtgcagcttgacacccgactaggttagaacgtcccaacgacgccatcacttttatagtctacttaagataactaaacgcgacatgaa 29027751  T
Q  204 tggtattta 212  Q
    || ||||||    
T  29027750 tgttattta 29027742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 20174314 - 20174497
Alignment:
Q  34 tgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcg 133  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||||||||    || |||| |||||||||| |||| |||||  | ||||| |  ||    
T  20174314 tgcagatagccatcggagggatagacctagatcaaccgagatagtatagaccttacacgtaaggatcactgtgcaatcagcaggtacaacttgacaaccg 20174413  T
Q  134 acttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattcca 218  Q
    ||| | ||| ||||| |||| |||| |||||| |||||| |||||||||||| | |||  || ||||||||| ||||||||||||    
T  20174414 actaggttaaaatgtcccaagggcctcatcacatgtatagtctacttaagat-actaattgcgacatgaatgttatttaattcca 20174497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 29849781 - 29849670
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| |||| |||||||||||| ||  || ||||||||||||||| |||| |||||||||||||||||||| |||||||||  || |||| | |||     
T  29849781 gcacgtaaggattaccgtgcgatcagcaagtgtagttagccatcggagggatagacctagatcaaccgagatagcatagaccccacacgtaaggagcacc 29849682  T
Q  104 gtgcgatcaaca 115  Q
    ||||||||||||    
T  29849681 gtgcgatcaaca 29849670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 32085826 - 32085693
Alignment:
Q  93 taagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaa 192  Q
    |||| ||||| ||||||||| || ||| ||||||| | |||||||| | |||| ||  |||||| | ||||||||||||  |||||||||||||| ||||    
T  32085826 taaggatcaccgtgcgatcagcaagtgcagcttgaaaatcgacttggtcagaacgtcacaacggtctcatcacttgtattgtctacttaagataactaaa 32085727  T
Q  193 cgcaacatgaatggtatttaattccagcaaaata 226  Q
    ||| ||||||||| ||||||| |||| |||||||    
T  32085726 cgcgacatgaatgttatttaaatccaacaaaata 32085693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 25885116 - 25885332
Alignment:
Q  13 gatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatca 112  Q
    |||||||||||||||||||| |||||||||||||  ||| |||| || ||||| | | |||||||||||||||  | || |||| ||||| |||||||||    
T  25885116 gatcaccgtgcgatcaacaggtgcagttagccattagagggataaacatagattatctgagatagtatagaccatgcacgtaaggatcaccgtgcgatca 25885215  T
Q  113 acaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattta 212  Q
     ||| || ||||| | |  | ||  | ||||||  | ||||||||| ||||||||||||| |  ||| ||||||| |||| ||  ||| |||| ||||||    
T  25885216 gcagttgcagctttacaaccaaccgggttagaacatcccaacggcctcatcacttgtatagttaactaaagataactaaatgcggcataaatgttattta 25885315  T
Q  213 attccagcaaaatagat 229  Q
    ||| || ||||||||||    
T  25885316 atttcaacaaaatagat 25885332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 31804697 - 31804761
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| |||||| || ||||||||    
T  31804697 ccaacggcctcatcacttgtatagtctacctaagataaataaacgcgacatgattgttatttaat 31804761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 25887694 - 25887744
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||||| ||||    
T  25887694 ccaacagcctcatcacttgtataatctacctaagataaataaacgcgacat 25887744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 27908909 - 27908959
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||||||||    
T  27908909 ccaacggcttcatcacttgtatagtctacctaagataaataaacgcaacat 27908959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 29719023 - 29719088
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaatt 215  Q
    |||||| || ||||||||||||| ||||| |||||||||||||||| |||| | || |||||||||    
T  29719023 ccaacgacctcatcacttgtatagtctacctaagataaataaacgcgacattactgttatttaatt 29719088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 17635559 - 17635606
Alignment:
Q  144 aatgttccaacggccccatcacttgtataatctacttaagataaataa 191  Q
    ||||| ||||||||| ||||||||||||| ||||| ||||||||||||    
T  17635559 aatgtcccaacggcctcatcacttgtatagtctacctaagataaataa 17635606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 23933298 - 23933345
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    ||||||| |||||| |||||||||| ||| ||||||||||||||||||    
T  23933298 gcacgtaaggatcatcgtgcgatcagcaggtgcagttagccatcggag 23933345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 25196319 - 25196275
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    ||||||||| | ||||||||||| ||||| |||||||||||||||    
T  25196319 ccaacggcctcgtcacttgtatagtctacctaagataaataaacg 25196275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 26667595 - 26667555
Alignment:
Q  160 catcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||||||||||||  |||||||||||||||| ||||    
T  26667595 catcacttgtataatctatctaagataaataaacgcgacat 26667555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 34488078 - 34487861
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    ||||||||||||||||| ||  |||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||| || |||| ||||  |||||| |    
T  34488078 ggatcaccgtgcgatcatcaagtgcaattagccatcggagggatagaccaagatcaaccgagatagtatagaccccgtacgtaaggatcatcgtgcgaac 34487979  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    | |||||||||||||| |  ||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||||||||| |||||    
T  34487978 agcaggtgtagcttgacaaccgactagattagaacgttccaacggccccatcacttgaatagtctacttaagataactaaaagcaacatgaatgttattt 34487879  T
Q  212 aattccagcaaaatagat 229  Q
    ||||||  ||||||||||    
T  34487878 aattccgacaaaatagat 34487861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 24265114 - 24265298
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatc 100  Q
    |||||||||| | |||||||| | | || ||| |||||||||||||| ||| |||| || ||||||||| ||||||||||||| |||| || |||| |||    
T  24265114 cctgcacgtaagaatcaccgtccaagcagcaggtgcagttagccatcagagggatagacatagatcaactgagatagtatagaacccgcacgtaaggatc 24265213  T
Q  101 actgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagat 185  Q
    || |||| |||| || ||| || |||| |  ||||| | |||||| || | |||| || ||||||||||||| ||||||||||||    
T  24265214 accgtgcaatcagcatgtgcaggttgacaaccgactaggttagaacgtccaaacgacctcatcacttgtatagtctacttaagat 24265298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 24341745 - 24341929
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatc 100  Q
    |||||||||| | |||||||| | | || ||| |||||||||||||| ||| |||| || ||||||||| ||||||||||||| |||| || |||| |||    
T  24341745 cctgcacgtaagaatcaccgtccaagcagcaggtgcagttagccatcagagggatagacatagatcaactgagatagtatagaacccgcacgtaaggatc 24341844  T
Q  101 actgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagat 185  Q
    || |||| |||| || ||| || |||| |  ||||| | |||||| || | |||| || ||||||||||||| ||||||||||||    
T  24341845 accgtgcaatcagcatgtgcaggttgacaaccgactaggttagaacgtccaaacgacctcatcacttgtatagtctacttaagat 24341929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 22755926 - 22755765
Alignment:
Q  53 gatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttcca 152  Q
    |||| ||||| ||| || |||||||||||||||||  || |||| ||||| |||| ||||  || || ||||||| |   || | | ||| || ||||||    
T  22755926 gataaacctaaatcgactgagatagtatagaccccacacgtaaggatcaccgtgcaatcagtagatgcagcttgacaactgattaggttaaaacgttcca 22755827  T
Q  153 acggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||| || ||||||||||||| ||||||||||||||||||||   ||||||||| ||||||||    
T  22755826 acgacctcatcacttgtatagtctacttaagataaataaacatgacatgaatgttatttaat 22755765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 24266740 - 24266826
Alignment:
Q  140 ttagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    |||||| || ||||||||| |||||||| |||| |||||||||||||| |||||   |||||||||  ||||||||||| |||||||    
T  24266740 ttagaacgtcccaacggcctcatcacttatatagtctacttaagataactaaacatgacatgaatgtcatttaattccatcaaaata 24266826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 24343371 - 24343457
Alignment:
Q  140 ttagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    |||||| || ||||||||| |||||||| |||| |||||||||||||| |||||   |||||||||  ||||||||||| |||||||    
T  24343371 ttagaacgtcccaacggcctcatcacttatatagtctacttaagataactaaacatgacatgaatgtcatttaattccatcaaaata 24343457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 18208054 - 18208119
Alignment:
Q  161 atcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    |||||||||||| || ||||| | ||||||||||| ||||||||| |||||||||||| |||||||    
T  18208054 atcacttgtatagtcaacttaggctaaataaacgcgacatgaatgttatttaattccaacaaaata 18208119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 15375602 - 15375654
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||    
T  15375602 gcacgtaaggatcaccgtgcgatcatcaggtgcagttagccatcggagggata 15375654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 24659695 - 24659747
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||    
T  24659695 gcacgtaaggatcaccgtgcgatcatcaggtgcagttagccatcggagggata 24659747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 20563799 - 20563845
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    |||||| |||||||||| |||||||||| ||||||||||||||||||    
T  20563799 cacgtaaggatcaccgtacgatcaacaggtgcagttagccatcggag 20563845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 20744461 - 20744503
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaa 192  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  20744461 ccaacggcctcatcacttgtataatctacctaagataaataaa 20744503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 23388646 - 23388696
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  23388646 ccaacggcctcatcacttgtatagtctacctaagataaataaacgcgacat 23388696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 17432266 - 17432214
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    |||||||||||||| |||||||||||| | |||||||||||||| ||| ||||    
T  17432266 gcacgtatggatcatcgtgcgatcaactggtgcagttagccatcagagggata 17432214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 24661993 - 24662045
Alignment:
Q  174 tctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    |||||||||||||| ||||||||||||||||  |||||| ||||| |||||||    
T  24661993 tctacttaagataattaaacgcaacatgaatcttatttacttccaacaaaata 24662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 24140865 - 24140819
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    |||||| ||||||||||| ||||| ||| ||||||||||||||||||    
T  24140865 cacgtaaggatcaccgtgtgatcagcaggtgcagttagccatcggag 24140819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 24659771 - 24659821
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    |||||| || ||||||||||||| ||||| |||||||||||||||| ||||    
T  24659771 ccaacgacctcatcacttgtatagtctacataagataaataaacgcgacat 24659821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 7318719 - 7318505
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    ||||||||||||||||| ||| ||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||| || || | ||||| ||||||||    
T  7318719 ggatcaccgtgcgatcagcaggtgcagttagtcatctgagggatagacctagatcaaccgagatagtatagaccccgcacgtatggatcaccgtgcgatc 7318620  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    | || ||| ||||||| |  ||||| | ||| || || ||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  7318619 agcaagtgcagcttgacaaccgactaggttataacgtcccaacggtctcatcacttgtatagtctacttaagataactaaacgcaacatgaatgttattt 7318520  T
Q  212 aattccagcaaaata 226  Q
    ||||||| |||||||    
T  7318519 aattccaacaaaata 7318505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 17152795 - 17152986
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| ||||||||||||||||| ||| |||||||||| ||| ||| |||| |||||||| ||| ||||| |||||||||||| |  |||| |||| |    
T  17152795 gcacgtaaggatcaccgtgcgatcagcaggtgcagttagctatcagagggataaacctagataaactgagatggtatagaccccgcatgtaaggatcatt 17152894  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
    |||||||||| ||||| || |||| |  ||||| | |||||||||  |||||||| ||||||||||||| |||||||||||||| |||||||    
T  17152895 gtgcgatcaataggtgcagattgacaaccgactaggttagaatgtctcaacggcctcatcacttgtatagtctacttaagataactaaacgc 17152986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3735052 - 3734835
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatc 100  Q
    |||||||||| ||||||||||||||||| ||| |||||||||| || |||| |||| |||||||||||||||||||||||||  || | |  | || |||    
T  3735052 cctgcacgtaaggatcaccgtgcgatcagcaggtgcagttagctattggagagatagacctagatcaaccgagatagtataggtcctgcatgttaggatc 3734953  T
Q  101 actgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    | || |||||||| ||||| | ||||| |  |||||   |||||| ||  |||| ||| ||||||||||||| ||||||||| |||| |||||   ||||    
T  3734952 agtgcgcgatcaataggtgcaacttgacacccgactgtgttagaacgtctcaacagcctcatcacttgtatagtctacttaaaataactaaacatgacat 3734853  T
Q  201 gaatggtatttaattcca 218  Q
    ||||| ||||||||||||    
T  3734852 gaatgttatttaattcca 3734835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 193
Target Start/End: Complemental strand, 15870049 - 15869860
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| |||||||||| ||||||| || | || ||||||||||||| ||||| |||||||||| |||||||||||||||||   || |||| |||||     
T  15870049 gcacgtaaggatcaccgtacgatcaataggtacaattagccatcggagggatattcctagatcaaacgagatagtatagacccaacacgtaaggatcacc 15869950  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaac 193  Q
     |||||||| |||||| | ||||| |   | || | |||||| ||||||||| || ||||||||| ||| |||||||||||||| |||||    
T  15869949 atgcgatcagcaggtgcatcttgacacctgtctagtttagaacgttccaacgacctcatcacttgcatagtctacttaagataactaaac 15869860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 6014014 - 6013823
Alignment:
Q  34 tgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcg 133  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||  | || |||| ||||| ||||||||||||| || | ||| | |  ||    
T  6014014 tgcagttaggcatcggagtgatagacctagatcaacc-agatattatagaccttgcacgtaaggatcaccgtgcgatcaacagatgcaacttaaaaaccg 6013916  T
Q  134 acttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    ||| | |||||| || |||||| || ||||||||||||| |||| ||| ||||| ||||||  ||||||||| ||||||| |||| |||||||    
T  6013915 actaggttagaacgtcccaacgtcctcatcacttgtatagtctatttatgataactaaacgggacatgaatgttatttaaatccaacaaaata 6013823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 3190736 - 3190928
Alignment:
Q  34 tgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcg 133  Q
    |||||||||||||||||| |||| |||||||| || ||||||||||||||||||  || |||| || |  ||||||||| ||| || || |||| |  ||    
T  3190736 tgcagttagccatcggagggatagacctagataaatcgagatagtatagaccccacacgtaaggattatcgtgcgatcagcagatgcagtttgacaaccg 3190835  T
Q  134 acttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    ||  | ||||||  | ||| ||||| ||||||||||||| |||||||||||||| |||| |  |||||| || ||||||| |||| |||||||    
T  3190836 accaggttagaacttcccatcggcctcatcacttgtatagtctacttaagataactaaatgtgacatgactgttatttaaatccaacaaaata 3190928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 4986970 - 4986824
Alignment:
Q  81 agaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctactt 180  Q
    |||||||| || |||| ||||| ||||||||||||| |  | ||||| |  ||||| | |||||| ||||||||| || |||||||| |||| |||||||    
T  4986970 agaccccgcacgtaaggatcaccgtgcgatcaacagatacaacttgacaaccgactaggttagaacgttccaacgacctcatcacttatatagtctactt 4986871  T
Q  181 aagataaataaacgcaacatgaatggtatttaat-tccagcaaaata 226  Q
    ||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  4986870 aagataactaaacgcgacatgaatgttatttaatatccaacaaaata 4986824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 4991068 - 4990922
Alignment:
Q  81 agaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctactt 180  Q
    |||||||| || |||| ||||| ||||||||||||| |  | ||||| |  ||||| | |||||| ||||||||| || |||||||| |||| |||||||    
T  4991068 agaccccgcacgtaaggatcaccgtgcgatcaacagatacaacttgacaaccgactaggttagaacgttccaacgacctcatcacttatatagtctactt 4990969  T
Q  181 aagataaataaacgcaacatgaatggtatttaat-tccagcaaaata 226  Q
    ||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  4990968 aagataactaaacgcgacatgaatgttatttaatatccaacaaaata 4990922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 10586679 - 10586892
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccat-cggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgat 110  Q
    |||||| |||||||||||||  |||||| |||||| || |  |||| |||||||| |||||||||||||||| ||||| || |||| |||||  ||||||    
T  10586679 ggatcatcgtgcgatcaacatgtgcagtaagccattcgaaaggatagacctagataaaccgagatagtatagcccccgcacgtaaggatcaccatgcgat 10586778  T
Q  111 caacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatt 210  Q
    ||| ||||| | ||||| |  |||||   |||||| || ||||   || ||||  || |||| |||||||||||||| ||||||| ||||||||| ||||    
T  10586779 caataggtgcaacttgacaaccgactaagttagaacgtcccaa---cctcatcctttttatagtctacttaagataactaaacgcgacatgaatgttatt 10586875  T
Q  211 taat-tccagcaaaata 226  Q
    |||| |||| |||||||    
T  10586876 taatatccaacaaaata 10586892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 9574838 - 9574762
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccg 88  Q
    |||||| |||| ||||||||  |||||||| ||||||||| || | |||||||||||||||||||||||||||||||    
T  9574838 ggatcatcgtgtgatcaacatgtgcagttaaccatcggagggacaaacctagatcaaccgagatagtatagaccccg 9574762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 1586417 - 1586294
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| |||||| |||| ||||| ||| |||||||| | ||| ||| |||| ||||| ||||||  ||||||||||||||||| || |||| |||| |    
T  1586417 gcacgtaaggatcatcgtgtgatcagcaggtgcagttatctatccgagggatagacctaaatcaacgaagatagtatagaccccgcacgtaaggatcaat 1586318  T
Q  104 gtgcgatcaacaggtgtagcttga 127  Q
    ||| |||||| ||||| |||||||    
T  1586317 gtgtgatcaataggtgcagcttga 1586294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 16297547 - 16297696
Alignment:
Q  64 atcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatc 163  Q
    ||||||||||||||||| ||||| | || |||| ||||| |||| || | |||||| ||||||| |  ||| | | |||||| || |||| |||| | ||    
T  16297547 atcaaccgagatagtatcgaccc-gcacgtaaggatcaccgtgcaatgagcaggtgcagcttgacaaccgattaggttagaacgtcccaatggcctcgtc 16297645  T
Q  164 acttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| |||||||||| ||||||||||| |||||| || ||||||||    
T  16297646 acttgtatagtctacttaaggtaaataaacgcgacatgactgttatttaat 16297696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 17829976 - 17829811
Alignment:
Q  48 ggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatg 147  Q
    |||| ||||||||||| |||||| ||||||||||||||| | || |||| ||||| ||| ||||||| |||| | ||||| |  ||| | | |||||| |    
T  17829976 ggagggatatacctag-tcaaccaagatagtatagaccctgcacgtaaggatcaccgtgtgatcaactggtgcaacttgacaaccgattaggttagaacg 17829878  T
Q  148 ttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    | |||||| |  ||||||||||||| ||||||||| ||||||||||   ||||||||  ||||||||    
T  17829877 taccaacgacttcatcacttgtatagtctacttaacataaataaacatgacatgaattttatttaat 17829811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 18202853 - 18202939
Alignment:
Q  2 ctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccg 88  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||| | ||  ||| ||||||||||||| | |||||||| ||||||    
T  18202853 ctgcacgtaaggatcactgtgcgatcagcagatgcagttagccattgaaggaatagacctagatcaaccaatatagtataaaccccg 18202939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17190879 - 17190929
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||||||    
T  17190879 cctgcacgtagggatcaccgtgcgatcaataggtgcagttagccatcggag 17190929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 39272819 - 39273016
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctaga-tcaaccgagatagtatagaccccgaacataagaatcac 102  Q
    ||||||| |||||||| || ||||||||| ||||||||||| |||||| |||| ||||| | |||||   || ||| |||||| || || |||| |||||    
T  39272819 gcacgtaaggatcaccatgtgatcaacaggtgcagttagccgtcggagggataaacctataatcaactaggacagt-tagacctcgcacgtaaggatcac 39272917  T
Q  103 tgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttc-caacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
     ||| ||||| |||||| | |||||    ||||| | ||||||   || |||||||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  39272918 cgtgtgatcagcaggtgcaacttgacgaccgactaggttagaaacgtctcaacggcctcatcacttgtatagtctacctaagataaataaacgcgacat 39273016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 1584496 - 1584439
Alignment:
Q  161 atcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattcca 218  Q
    |||||||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||    
T  1584496 atcacttgtatagtctacttaagataactaaacgcgatatgaatgttatttaattcca 1584439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 8978649 - 8978841
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatataccta-gatcaaccgagatagtatagaccccgaacataagaatcac 102  Q
    ||||||| ||||||||||||||||| ||| |||| ||||||||||||| |||| |||||  |||||| | || ||||  ||||||| |  |||| ||||     
T  8978649 gcacgtaaggatcaccgtgcgatcagcaggtgcaattagccatcggagggatagacctataatcaactgggagagta-cgaccccgcatgtaaggatcat 8978747  T
Q  103 tgtgcgatcaacaggtgtagcttgagattcgacttgattag-aatgttccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
    ||||||||||||| ||| | |||||    ||||| | |||| || || | |||| || |||| |||||||| ||||| ||||||||||||||||    
T  8978748 tgtgcgatcaacatgtgcaacttgacgaccgactaggttagaaacgtccgaacgacctcatctcttgtatagtctacctaagataaataaacgc 8978841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 2564126 - 2564074
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
    |||||| || ||||||||||||| ||||| |||||||||||||||||||||||    
T  2564126 ccaacgaccgcatcacttgtatagtctacctaagataaataaacgcaacatga 2564074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 7397435 - 7397375
Alignment:
Q  163 cacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaa 223  Q
    |||||||||| |||||||||||||| ||| ||| ||||||||| |||||||||||| ||||    
T  7397435 cacttgtatagtctacttaagataactaatcgccacatgaatgttatttaattccaacaaa 7397375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 8053845 - 8053901
Alignment:
Q  144 aatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||| |||||| || ||||||||||||| ||||| |||||||||||||||| ||||    
T  8053845 aatgtcccaacgacctcatcacttgtatagtctacctaagataaataaacgcgacat 8053901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 16366015 - 16365971
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||    
T  16366015 ccaactgcctcatcacttgtatattctacttaagataaataaacg 16365971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 16058680 - 16058727
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    ||||||| || |||||||||||||| ||| ||||||||||||||||||    
T  16058680 gcacgtaagggtcaccgtgcgatcagcaggtgcagttagccatcggag 16058727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 6013962 - 6013928
Alignment:
Q  3 tgcacgtatggatcaccgtgcgatcaacagatgca 37  Q
    |||||||| ||||||||||||||||||||||||||    
T  6013962 tgcacgtaaggatcaccgtgcgatcaacagatgca 6013928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 8313146 - 8313212
Alignment:
Q  106 gcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtata 172  Q
    |||||||||||| |  |||||| |  ||||| ||||||||||| ||||||||| |||||||||||||    
T  8313146 gcgatcaacaggagccgcttgacaaccgactagattagaatgtcccaacggcctcatcacttgtata 8313212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 13289092 - 13289142
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtga 54  Q
    ||||||| |||||| |||||||||||||  |||||||| ||||||||||||    
T  13289092 gcacgtaaggatcatcgtgcgatcaacatgtgcagttaaccatcggagtga 13289142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 20582566 - 20582516
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    |||||| || ||||||||||||| ||||| |||||||||||||||| ||||    
T  20582566 ccaacgacctcatcacttgtatagtctacctaagataaataaacgcgacat 20582516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 4986815 - 4986762
Alignment:
Q  174 tctacttaagataaataaacgcaacatgaatggtatttaat-tccagcaaaata 226  Q
    |||||||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  4986815 tctacttaagataactaaacgcgacatgaatgttatttaatatccaacaaaata 4986762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 4990913 - 4990860
Alignment:
Q  174 tctacttaagataaataaacgcaacatgaatggtatttaat-tccagcaaaata 226  Q
    |||||||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  4990913 tctacttaagataactaaacgcgacatgaatgttatttaatatccaacaaaata 4990860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 4819156 - 4819100
Alignment:
Q  144 aatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    |||||||||||| |  ||||||||||||| ||||| |||||||||| ||||| ||||    
T  4819156 aatgttccaacgacatcatcacttgtatagtctacctaagataaatgaacgcgacat 4819100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 11803378 - 11803334
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    |||| |||| ||||||||||||| ||||| |||||||||||||||    
T  11803378 ccaatggcctcatcacttgtatagtctacctaagataaataaacg 11803334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 28933304 - 28933514
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||  || |||| |||||     
T  28933304 gcacgtaaggatcaccgtgcgatcaacaagtgcagttagccatcggagggataaacctagatcaatcgagatagtatagaccccacacgtaaggatcacc 28933403  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaa 203  Q
    |||||||||||||||| ||||||| |  ||||| | ||||||  | |||||| || ||||||||||||| ||||||||| |||| |||| |  |||||||    
T  28933404 gtgcgatcaacaggtgcagcttgacacccgactaggttagaacatcccaacgacctcatcacttgtatagtctacttaatataactaaatgtgacatgaa 28933503  T
Q  204 tggtatttaat 214  Q
    || ||||||||    
T  28933504 tgttatttaat 28933514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 21688496 - 21688719
Alignment:
Q  3 tgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcac 102  Q
    |||||||| | ||||||||||||||| ||| | ||| |||||||||||| |||| |||||||||||||||||||||||| |||||  |||||||  ||||    
T  21688496 tgcacgtaagcatcaccgtgcgatcagcaggtccagctagccatcggagggatagacctagatcaaccgagatagtatataccccacacataagggtcac 21688595  T
Q  103 tgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
     |||||||||||||||| ||||||| |  ||||||| |||||| || ||||  | |  |||||||||||| |||||||||||| | ||||||| ||||||    
T  21688596 cgtgcgatcaacaggtgcagcttgacaaccgacttggttagaacgtcccaatagacttatcacttgtatagtctacttaagatgactaaacgcgacatga 21688695  T
Q  203 atggtatttaattccagcaaaatag 227  Q
    ||  |||||||||||| ||||||||    
T  21688696 at-ttatttaattccaacaaaatag 21688719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21907892 - 21907678
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagacccc-gaacataagaat 99  Q
    |||||||||| ||||||||||||||||| ||  |||| ||||||||||||  |||| ||||||||||| ||||||||||| |||||| | ||||||| ||    
T  21907892 cctgcacgtaaggatcaccgtgcgatcatcatgtgcacttagccatcggatggatagacctagatcaatcgagatagtattgacccccgcacataaggat 21907793  T
Q  100 cactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaaca 199  Q
    |||||||  |||| |||||| ||||||| |  ||||| | |||||| || |||||  || ||||||||||||| |||||||||||||| ||||| | |||    
T  21907792 cactgtgtcatcagcaggtgcagcttgacaaccgactaggttagaacgtaccaacaacctcatcacttgtatagtctacttaagataactaaacacgaca 21907693  T
Q  200 tgaatggtatttaat 214  Q
    |||||| ||||||||    
T  21907692 tgaatgttatttaat 21907678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 8241715 - 8241503
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    ||||||||| ||||||||  | ||||||||||||| |||| |||||||||||||||||||||||||||||||||  | || |||| ||||||  ||||||    
T  8241715 ggatcaccg-gcgatcaaagggtgcagttagccattggagggatatacctagatcaaccgagatagtatagaccttgcacgtaaggatcacta-gcgatc 8241618  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    | |||||| ||||||| |   || | | ||||||  |  ||||| || ||||||||||||  |||||||||||||||||||||| ||||||||| |||||    
T  8241617 agcaggtgaagcttgaaaactgaataggttagaacatcgcaacgccctcatcacttgtattgtctacttaagataaataaacgcgacatgaatgttattt 8241518  T
Q  212 aattccagcaaaata 226  Q
    ||||||| |||||||    
T  8241517 aattccaacaaaata 8241503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 19245021 - 19244819
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||| |||||||||||||  ||||||||| |||| ||| |||||||||||||||||| || |||||||||||||| || || | ||||| ||||||||    
T  19245021 ggatcatcgtgcgatcaacatgtgcagttagtcatcagagggatatacctagatcaaccaagttagtatagaccccgcacgtagggatcaccgtgcgatc 19244922  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    | |||||| |||||||    ||||| | |||||| || | ||| ||| ||||||||||||| || ||||||||||| |||||   || |||||| |||||    
T  19244921 agcaggtgcagcttgacgaccgactaggttagaacgtcctaacagcctcatcacttgtatactcaacttaagataactaaacatgacgtgaatgttattt 19244822  T
Q  212 aat 214  Q
    |||    
T  19244821 aat 19244819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 4340127 - 4339977
Alignment:
Q  64 atcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatc 163  Q
    ||||||||||||||||||||||||| || ||||||||| ||||| |||||||| || ||||||| |   || | |||||||| || ||||||||| ||||    
T  4340127 atcaaccgagatagtatagaccccgcacgtaagaatcattgtgcaatcaacagatgcagcttgacagctgattagattagaacgtcccaacggcctcatc 4340028  T
Q  164 acttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    |||| |||| |||| |||||||||||||| |  |||||| || ||||||||    
T  4340027 acttatatagtctatttaagataaataaatgtgacatgactgttatttaat 4339977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 6630352 - 6630544
Alignment:
Q  20 gtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtg 119  Q
    ||||||||| ||| |||| ||||||||  ||  ||||||||| ||||||||||||||||||| |||    || |||| ||||  ||||||||| | ||||    
T  6630352 gtgcgatcagcaggtgcaattagccattagaaggatatacctggatcaaccgagatagtataaacctttcacgtaaggatcatcgtgcgatcagctggtg 6630451  T
Q  120 tagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattta 212  Q
     ||||||| |  ||| | | |||||||||  |||||  ||||||||||||||| ||||||||||||||  |||||| ||||||||| ||||||    
T  6630452 cagcttgacaaccgagtaggttagaatgtctcaacgtacccatcacttgtatagtctacttaagataacaaaacgcgacatgaatgttattta 6630544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 11177387 - 11177272
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| ||||||| ||||||||  ||  |||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||  || |||| ||||||    
T  11177387 gcacgtaaggatcactgtgcgatcgtcaagtgcagttagccatcagagggataaacctaaatcaaccgagatagtatagaccccacacgtaaggatcact 11177288  T
Q  104 gtgcgatcaacaggtg 119  Q
    ||||||| | ||||||    
T  11177287 gtgcgataagcaggtg 11177272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 22568292 - 22568071
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatataccta--gatcaaccgagatagtatagaccccgaacataagaatcac 102  Q
    |||||| |||||| |||||||||||||  ||||||| |||||||||| |||| |||||  ||||||  ||||||||||||| || | || |||| |||||    
T  22568292 cacgtaaggatcatcgtgcgatcaacatgtgcagttggccatcggagagatagacctatagatcaattgagatagtatagaacctgcacgtaaggatcac 22568193  T
Q  103 tgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
      | |||| | || ||| | ||| | |  ||||| | ||||||  | |||||| || ||||||||||||| |||||||||||||| |||| ||||||| |    
T  22568192 catacgattagcatgtgcaactttacacccgactaggttagaacatcccaacgacctcatcacttgtatattctacttaagataactaaatgcaacataa 22568093  T
Q  203 atggtatttaattccagcaaaa 224  Q
    ||| ||||||| |||| |||||    
T  22568092 atgttatttaaatccaacaaaa 22568071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 15466818 - 15466599
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| ||||| ||||||||||| ||| |||| |||| ||||  || ||||||| || |||||||||||||||||||||||   || |||| ||||      
T  15466818 gcacgtaaggatcgccgtgcgatcagcaggtgcatttagacatcaaagggatatacttaaatcaaccgagatagtatagaccctacacgtaaggatcatc 15466719  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaa 203  Q
     ||||||||  | ||| | ||| | |  ||| | | |||| | || ||||||||| ||||| ||||||| |||||||||||||| ||||||  |||| ||    
T  15466718 atgcgatcagtatgtgcatcttaacaaccgagtaggttaggacgtcccaacggcctcatcatttgtatagtctacttaagataactaaacgtgacataaa 15466619  T
Q  204 tggtatttaattccagcaaa 223  Q
    || |||||||||||| ||||    
T  15466618 tgttatttaattccaacaaa 15466599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 9898744 - 9898830
Alignment:
Q  140 ttagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    |||||||||  ||| |||| | ||||||||||| |||||||||||||| ||||||| ||||||||| ||||||| |||| |||||||    
T  9898744 ttagaatgtctcaaaggcctcgtcacttgtatagtctacttaagataactaaacgcgacatgaatgttatttaactccaacaaaata 9898830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 27124282 - 27124338
Alignment:
Q  144 aatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||| |||||| || ||||||||||||||||||| |||||||||||||||| ||||    
T  27124282 aatgtcccaacgacctcatcacttgtataatctacctaagataaataaacgcgacat 27124338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 11136331 - 11136284
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  11136331 gcacgtaaggatcaccgtgcgatcagcaggtgcagttagccatcggag 11136284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 23009074 - 23009122
Alignment:
Q  3 tgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    |||||||| ||||||||||| ||||| ||| ||||||||||||||||||    
T  23009074 tgcacgtaaggatcaccgtgagatcagcagctgcagttagccatcggag 23009122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 23779290 - 23779242
Alignment:
Q  3 tgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    |||||||| ||||||||||| ||||| ||| ||||||||||||||||||    
T  23779290 tgcacgtaaggatcaccgtgagatcagcagctgcagttagccatcggag 23779242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9517173 - 9517118
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||| |||| ||||||  ||||||||||||| |||||||||||||||||| ||||    
T  9517173 cctgcgcgtaaggatcatggtgcgatcaacaggtgcagttagccatcggagggata 9517118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 17382422 - 17382380
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccat 46  Q
    ||||||||||||| ||||||||||||||| || ||||||||||    
T  17382422 gcacgtatggatcgccgtgcgatcaacaggtgtagttagccat 17382380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17826808 - 17826858
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    |||||||||| |||||| | || ||||||||| ||||||||||||||||||    
T  17826808 cctgcacgtaaggatcatcatgggatcaacaggtgcagttagccatcggag 17826858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27124209 - 27124255
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatc 47  Q
    ||||||||||  |||||||||||||||| ||| ||||||||||||||    
T  27124209 cctgcacgtaaagatcaccgtgcgatcagcaggtgcagttagccatc 27124255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 14079243 - 14079312
Alignment:
Q  145 atgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    |||| ||||||||| ||| ||||||||| |||||  ||||||||||||| | |||||| || ||||||||    
T  14079243 atgtcccaacggcctcataacttgtatagtctaccaaagataaataaacacgacatgactgttatttaat 14079312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 9838662 - 9838610
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
    |||||| || ||||||||||||| |||| ||||||||||||||| | ||||||    
T  9838662 ccaacgacctcatcacttgtatagtctaattaagataaataaacacgacatga 9838610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 24215771 - 24215715
Alignment:
Q  160 catcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattc 216  Q
    ||||||||  ||| || ||||||||||| | ||||||||||||||| ||||||||||    
T  24215771 catcacttaaatagtccacttaagataactgaacgcaacatgaatgttatttaattc 24215715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 24252019 - 24252099
Alignment:
Q  138 gattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattcca 218  Q
    |||||||| || ||||| | | ||||||||  ||| ||||||||  |||| ||||||| ||||||||| ||||||||||||    
T  24252019 gattagaacgtcccaacagactcatcacttagatagtctacttagaataattaaacgcgacatgaatgttatttaattcca 24252099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 27737475 - 27737519
Alignment:
Q  145 atgttccaacggccccatcacttgtataatctacttaagataaat 189  Q
    |||| ||||||||| ||||||||||||| ||||| ||||||||||    
T  27737475 atgtcccaacggcctcatcacttgtatagtctacgtaagataaat 27737519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 24281719 - 24281505
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    ||||||||||| ||||| ||| ||||||||||||||  || |||| ||||||||| ||||||||||||||||||||| |  |||| |||||||||||| |    
T  24281719 ggatcaccgtgggatcagcaggtgcagttagccatcaaagggatagacctagatctaccgagatagtatagaccccgcatgtaaggatcactgtgcgacc 24281620  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    | |||||| ||||||| |  ||||| | |||||| || ||||| ||| ||||||||| ||| |||||||||||||| ||||||  ||||||||| |||||    
T  24281619 agcaggtggagcttgacacccgactaggttagaacgtcccaacagcctcatcacttgcatagtctacttaagataactaaacgggacatgaatgttattt 24281520  T
Q  212 aattccagcaaaata 226  Q
    ||||||| |||||||    
T  24281519 aattccaacaaaata 24281505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 33191132 - 33190923
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatc 100  Q
    |||||||||| |||||||| |||||||||||| ||  |||||||||| ||| |||| ||||||||||||||||||||||||||||| | || |||| |||    
T  33191132 cctgcacgtaaggatcaccatgcgatcaacaggtgttgttagccatcagagggataaacctagatcaaccgagatagtatagaccctgcacgtaaggatc 33191033  T
Q  101 actgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    |||||||||| | |||||| ||||||| | |||||| | ||| || || | ||||  | |||||||||||||| ||||||||||||| |||| || ||||    
T  33191032 actgtgcgattagcaggtgcagcttgacaatcgactaggttaaaacgtcctaacgaactcatcacttgtataacctacttaagataactaaatgcgacat 33190933  T
Q  201 gaatggtatt 210  Q
    ||||| ||||    
T  33190932 gaatgttatt 33190923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 25404142 - 25404338
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| ||||||||||||||||||||  |||||||||||||| ||| |||| || |||||||||| ||||  ||||||||||| || |||| ||||||    
T  25404142 gcacgtagggatcaccgtgcgatcaacatgtgcagttagccatcagagggatagacttagatcaaccaagatcatatagaccccgcacgtaaggatcact 25404241  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    |||||||||||||||| ||||||| |  | ||| | ||| || || |||||||||  |||||||||||| ||||  |||||||||||||||| ||||    
T  25404242 gtgcgatcaacaggtgcagcttgacaaccaactaggttaaaacgtcccaacggccttatcacttgtatagtctatctaagataaataaacgccacat 25404338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 14780001 - 14779805
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactg 104  Q
    |||||| | ||||||| |||||||  || |||| |||||||| |||  | || ||||||||||||||||||||||||||||||  ||||||| ||||| |    
T  14780001 cacgtaagaatcaccgcgcgatcagaaggtgcatttagccattggatggttaaacctagatcaaccgagatagtatagaccccatacataaggatcaccg 14779902  T
Q  105 tgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatg 201  Q
    |||||||| |||||| ||||||| |  ||||| | |||||| || |||||||||  |||||||||||| ||||| | |||||||||||||| |||||    
T  14779901 tgcgatcagcaggtgcagcttgacaaccgactaggttagaacgtcccaacggccttatcacttgtatagtctacctgagataaataaacgcgacatg 14779805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 25960829 - 25961034
Alignment:
Q  20 gtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtg 119  Q
    ||||||||| ||| |||||||||||||| ||  ||||||| ||||||||| |||||| ||||||||||  || |||| ||| |  || |||||| |||||    
T  25960829 gtgcgatcagcaggtgcagttagccatcagaaggatatacatagatcaactgagataatatagaccccacacgtaaggatcgccatgtgatcaataggtg 25960928  T
Q  120 tagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccag 219  Q
    || ||||| |   |||| |||||||| || ||||||||| || |||||||||| ||||||||||||||  |||| | ||||||||| ||||||||||||     
T  25960929 taacttgacaactgactagattagaa-gtcccaacggcctcaacacttgtatagtctacttaagataacgaaacacgacatgaatgttatttaattccaa 25961027  T
Q  220 caaaata 226  Q
    |||||||    
T  25961028 caaaata 25961034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 18100659 - 18100882
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| ||||||  |||||| || ||  |||||||| ||||| |||  ||| ||||||||||| ||||||||||||||||||| || |||| |||||     
T  18100659 gcacgtaaggatcattgtgcgaccagcatgtgcagttatccatcagaggaataaacctagatcaatcgagatagtatagaccccgcacgtaaggatcacc 18100758  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaa 203  Q
    ||| ||||| |||||| | ||||| |  | | | | |||||| || ||||||||| ||||||||||||| |||||||||||||| ||||||  ||||||     
T  18100759 gtgtgatcagcaggtgcaacttgacaaccaagtaggttagaacgtcccaacggcctcatcacttgtatagtctacttaagataactaaacgtgacatgac 18100858  T
Q  204 tggtatttaat-tccagcaaaata 226  Q
    || |||||||| |||| |||||||    
T  18100859 tgttatttaatatccaacaaaata 18100882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 21449524 - 21449342
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||||||||| || | ||| ||||||||||||| || | |||| || |||||||||||||||||||||||||||| || |||| |||||  ||||| |    
T  21449524 ggatcaccgtgcaattagcaggtgcagttagccattggtgggataaacatagatcaaccgagatagtatagaccccgcacgtaaggatcaccatgcgacc 21449425  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    | |||||| ||||||| |  ||||| | |||||| || ||||| |||  |||| ||||||| ||||| |||||||||||||||    
T  21449424 agcaggtgaagcttgacaaccgactaggttagaacgtcccaaccgccttatcatttgtatagtctacctaagataaataaacg 21449342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 16179458 - 16179335
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| |||||  |||||||||| |||||||||||||||||| ||| |||| ||||||||||| |||||||||||| |||||| ||||||| |||||     
T  16179458 gcacgtaaggatcgtcgtgcgatcagcagatgcagttagccatcagagggatagacctagatcaatcgagatagtatataccccgcacataaggatcacc 16179359  T
Q  104 gtgcgatcaacaggtgtagcttga 127  Q
    ||| ||||  |||||| |||||||    
T  16179358 gtgtgatctgcaggtgcagcttga 16179335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 28008491 - 28008348
Alignment:
Q  71 gagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgta 170  Q
    |||||||||||||||||  || |||| ||||||||||||||| |||||| ||||||| |  ||| |   ||| || || |||||  || || ||||||||    
T  28008491 gagatagtatagaccccacacgtaaggatcactgtgcgatcagcaggtgcagcttgacaaccgattaagttataacgtcccaacaacctcaccacttgta 28008392  T
Q  171 taatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||||||||||||||||||| |||||| || ||||||||    
T  28008391 taatctacttaagataaataaacgcgacatgactgttatttaat 28008348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 17121284 - 17121367
Alignment:
Q  140 ttagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaa 223  Q
    ||||||||| |||||| || ||||||||  |||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  17121284 ttagaatgtcccaacgacctcatcacttagataatctacttaagataagtaaacgcgacatgaatgttatttaattccaacaaa 17121367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 16112197 - 16112052
Alignment:
Q  81 agaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctactt 180  Q
    |||||||| || |||| ||| | |||||||||||||||||| ||||| |   ||||   ||||||||| |||||  || ||||||||||||| |||||||    
T  16112197 agaccccgcacgtaaggatctccgtgcgatcaacaggtgtaacttgacaactgactacgttagaatgtcccaacatcctcatcacttgtatagtctactt 16112098  T
Q  181 aagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    ||||||| ||||| | |||||| || ||||||| |||| |||||||    
T  16112097 aagataactaaactctacatgactgttatttaaatccaacaaaata 16112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 24214956 - 24214795
Alignment:
Q  34 tgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcg 133  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||||||||||||||  || ||||   ||| |||| |||| |||||| ||||||| |  ||    
T  24214956 tgcagctagccatcggagggatagacctagatcaaccaagatagtatagaccccacacgtaaggcccaccgtgcaatcagcaggtgcagcttgacaaccg 24214857  T
Q  134 acttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
    ||| | |||||| ||  || || || ||||||||  ||| |||||||||||||| |||||||    
T  24214856 actaggttagaacgtctcatcgacctcatcacttcaatagtctacttaagataactaaacgc 24214795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 12012606 - 12012670
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||  ||||||||| ||||||||    
T  12012606 ccaacggcctcatcacttgtatagtctacttaagataaataaacgtgacatgaatgttatttaat 12012670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 9787624 - 9787731
Alignment:
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaa 203  Q
    |||||||||||||||| ||||||| |  ||||| | |||||| || |||||||||  |||||||||||| |||||||||| ||  ||||| |||||||||    
T  9787624 gtgcgatcaacaggtgcagcttgacaaccgactaggttagaacgtcccaacggccttatcacttgtatagtctacttaaggtacttaaacacaacatgaa 9787723  T
Q  204 tggtattt 211  Q
    || |||||    
T  9787724 tgttattt 9787731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 15807726 - 15807876
Alignment:
Q  64 atcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatc 163  Q
    ||||||||||||| ||||||||||| |  |||| ||||| ||| ||||| |||||| | ||||| |  | | | | |||||| || |||||| || ||||    
T  15807726 atcaaccgagatattatagaccccgcatgtaaggatcaccgtgtgatcagcaggtgcaacttgacaaccaattaggttagaacgtcccaacgacctcatc 15807825  T
Q  164 acttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| |||||||||||||| ||||| | ||||||||  ||||||||    
T  15807826 acttgtatagtctacttaagataactaaacacgacatgaatattatttaat 15807876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 21847878 - 21847813
Alignment:
Q  159 ccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaa 224  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||| || |||||    
T  21847878 ccatcacttgtatagtctacttaagataactaaacgcgacatgaatgttatttaatttcaacaaaa 21847813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 17359470 - 17359406
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||| ||| ||||||||||||| ||||| |||||||||||||||| |||||| || ||||||||    
T  17359470 ccaacagcctcatcacttgtatagtctacctaagataaataaacgcgacatgattgttatttaat 17359406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 18736038 - 18736088
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||| ||||    
T  18736038 ccaacggcctcatcacttatatagtctacttaagataaataaacgcgacat 18736088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16916610 - 16916659
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcgga 50  Q
    |||||| ||| ||||||||||||||||||||  |||||||||||||||||    
T  16916610 cctgcatgtaaggatcaccgtgcgatcaacatgtgcagttagccatcgga 16916659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 15543681 - 15543733
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||||| ||||||||||||||||| ||| |||| ||||||||||||| ||||    
T  15543681 gcacgtaaggatcaccgtgcgatcagcaggtgcaattagccatcggagggata 15543733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 15543757 - 15543809
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
    |||||| || ||||||||||||||||||| ||||||||||||| || ||||||    
T  15543757 ccaacgacctcatcacttgtataatctacctaagataaataaaggcgacatga 15543809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 18826075 - 18826031
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcg 48  Q
    ||||||| |||||||||||| |||||||| |||||||||||||||    
T  18826075 gcacgtaaggatcaccgtgcaatcaacaggtgcagttagccatcg 18826031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 21334438 - 21334486
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacc 60  Q
    ||||||| ||||||||||||| |||||||| ||||||||| ||||||||    
T  21334438 ggatcacagtgcgatcaacaggtgcagttatccatcggagggatatacc 21334486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 25403890 - 25403930
Alignment:
Q  160 catcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  25403890 catcacttgtatagtctacctaagataaataaacgcaacat 25403930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 29242815 - 29242765
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    |||||| || ||||||||||||| ||||| |||||||||||||||| ||||    
T  29242815 ccaacgacctcatcacttgtatagtctacctaagataaataaacgcgacat 29242765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 9401814 - 9401769
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
    ||||| ||| ||||||| ||||| ||||||||||||||||||||||    
T  9401814 ccaacagcctcatcactcgtatagtctacttaagataaataaacgc 9401769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 22623200 - 22623159
Alignment:
Q  151 caacggccccatcacttgtataatctacttaagataaataaa 192  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  22623200 caacggcctcatcacttgtatagtctacctaagataaataaa 22623159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 15160183 - 15160235
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||||| |||||| |||| ||||||||| || ||||||||||||||| ||||    
T  15160183 gcacgtaaggatcatcgtgtgatcaacaggtgaagttagccatcggagagata 15160235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 15813350 - 15813398
Alignment:
Q  166 ttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||| ||||  |||||||||||||||| ||||||||| ||||||||    
T  15813350 ttgtatagtctatctaagataaataaacgcgacatgaatgttatttaat 15813398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 17610046 - 17610090
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    |||||| || ||||||||||||| ||||| |||||||||||||||    
T  17610046 ccaacgaccgcatcacttgtatagtctacctaagataaataaacg 17610090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 18528905 - 18528961
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacc 60  Q
    ||||||| |||||||||||| |||| ||| || ||||||||||| ||| ||||||||    
T  18528905 gcacgtaaggatcaccgtgcaatcagcaggtgtagttagccatccgagggatatacc 18528961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 18825954 - 18825910
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    |||||| || ||||||||||||| ||||| |||||||||||||||    
T  18825954 ccaacgacctcatcacttgtatagtctacctaagataaataaacg 18825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 32382717 - 32382777
Alignment:
Q  67 aaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttga 127  Q
    |||||||||||||||||||||| || |||  ||||| ||||||||| ||| || |||||||    
T  32382717 aaccgagatagtatagaccccgcacgtaatgatcaccgtgcgatcagcagatgcagcttga 32382777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 167952 - 168152
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||| ||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||||||||||||  || || | ||||| ||||||||    
T  167952 ggatcatcgtgcgatcagtaggtgcagttagccatcggagggatatacctagatcaaccgagatagtatagaccccacacgtatggatcaccgtgcgatc 168051  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    |||||||| ||||||| |   |||| | |||||| || |||||| || | ||||||||||| |||| ||||||||| ||||||| ||  ||||| |||||    
T  168052 aacaggtgcagcttgacaactgactaggttagaacgtcccaacgacctcgtcacttgtatagtctagttaagataactaaacgcgactagaatgttattt 168151  T
Q  212 a 212  Q
    |    
T  168152 a 168152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 168029 - 168062
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcag 38  Q
    |||||||||||||||||||||||||||| |||||    
T  168029 cacgtatggatcaccgtgcgatcaacaggtgcag 168062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 14649340 - 14649140
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||| ||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||||||||||||  || || | ||||| ||||||||    
T  14649340 ggatcatcgtgcgatcagtaggtgcagttagccatcggagggatatacctagatcaaccgagatagtatagaccccacacgtatggatcaccgtgcgatc 14649241  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    |||||||| ||||||| |   |||| | |||||| || |||||| || | ||||||||||| |||| ||||||||| ||||||| ||  ||||| |||||    
T  14649240 aacaggtgcagcttgacaactgactaggttagaacgtcccaacgacctcgtcacttgtatagtctagttaagataactaaacgcgactagaatgttattt 14649141  T
Q  212 a 212  Q
    |    
T  14649140 a 14649140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 22357177 - 22357373
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| |||||| | |||||||||||| || | ||||||||| ||| |||| ||||||| ||  ||||||||||||||||||| || |||| |||||     
T  22357177 gcacgtaaggatcatcatgcgatcaacag-tggatttagccatcagagggatagacctagaccagtcgagatagtatagaccccgcacgtaaggatcacc 22357275  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatg 201  Q
    |||||||||||||||| ||||||| |  ||||| | |||||||||  ||||   | ||||||||||||| |||| ||||||||| ||||||| |||||    
T  22357276 gtgcgatcaacaggtgcagcttgacaaccgactaggttagaatgtctcaacaatctcatcacttgtatattctatttaagataactaaacgcgacatg 22357373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 19092731 - 19092534
Alignment:
Q  21 tgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgt 120  Q
    |||||| | ||| ||||||||||||||| || |||| ||||||||||||  ||||||||||||||| | || |||| ||||   |||||||||||||||     
T  19092731 tgcgatgagcaggtgcagttagccatcgaagggataaacctagatcaacaaagatagtatagaccctgcacgtaaggatcatcatgcgatcaacaggtgc 19092632  T
Q  121 agcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattcca 218  Q
    ||||||  |   |||    |||||| || ||||||| | ||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  19092631 agcttggcaactgacaaagttagaacgtcccaacggtctcatcacttgtatagtctacttaagttaactaaacgcaacatgaatgttatttaaatcca 19092534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 5679659 - 5679436
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    ||||||| |||||||| ||||||||  || || |||||||||| ||||  ||  |||||||||||| | ||||||||| ||| || |  |||  ||||||    
T  5679659 gcacgtaaggatcaccatgcgatcagtagctgtagttagccattggaggaattgacctagatcaacagggatagtataaaccacgcatgtaaagatcact 5679560  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctactt-aagataaataaacgcaacatga 202  Q
    ||||||||| |||||| ||||| | |  ||||| | |||||| || |||||  || ||| ||||||||| ||||||| ||||||| ||||||| ||||||    
T  5679559 gtgcgatcagcaggtgcagcttaacacccgactagcttagaacgtcccaacaacctcattacttgtatagtctactttaagataactaaacgcgacatga 5679460  T
Q  203 atggtatttaattccagcaaaata 226  Q
    ||| |||||||||||| |||||||    
T  5679459 atgttatttaattccaacaaaata 5679436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 13909279 - 13909120
Alignment:
Q  34 tgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcg 133  Q
    |||| |||| ||| |||| |||||||||| |||||| |||| ||||||||||||  || |||| ||||| |||||||||||||||| | ||||| |  ||    
T  13909279 tgcaattagacattggagggatatacctaaatcaacggagacagtatagaccccacacttaaggatcaccgtgcgatcaacaggtgcaacttgaaaaccg 13909180  T
Q  134 acttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaac 193  Q
    ||| | |||||| || |||||||||  |||||||||||||||||| ||| ||||||||||    
T  13909179 actaggttagaacgtcccaacggccttatcacttgtataatctacctaatataaataaac 13909120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 17672386 - 17672236
Alignment:
Q  64 atcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatc 163  Q
    |||||||||||||||||| |||| | || |||  ||||||||||||||| |||||| ||||||| | |||| | | |||||  || |||||| || ||||    
T  17672386 atcaaccgagatagtatacaccctgcacgtaacgatcactgtgcgatcagcaggtgcagcttgacaatcgattaggttagagcgtcccaacgacctcatc 17672287  T
Q  164 acttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    || |||||| |||| ||||||||||||||||| |||||| || ||||||||    
T  17672286 acctgtatagtctatttaagataaataaacgcgacatgactgttatttaat 17672236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 8969377 - 8969567
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactg 104  Q
    |||||| |||||||||| |||||||||| ||||  ||||||| |||| |||||||||| |||| | |||| |||| || ||||| || |||| |||| ||    
T  8969377 cacgtaaggatcaccgtacgatcaacaggtgcaactagccattggagggatatacctaaatcatctgagagagtaaag-ccccgcacgtaaggatcattg 8969475  T
Q  105 tgcgatcaacaggtgtagcttga-gattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
    || |||||||||||| | ||||| ||  ||||| | |||||| || || |||||| |||||| |||||| ||||||| |||||| |||||||    
T  8969476 tgtgatcaacaggtgcaacttgacgaaccgactaggttagaacgtcccgacggcctcatcacgtgtatagtctacttcagataactaaacgc 8969567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 22173195 - 22173306
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    |||||| |||||||| |||| |||  |||| ||| |||||||||| || |||| ||||||||||||||||||||||||||||| | || |||| |||||     
T  22173195 gcacgtgtggatcactgtgcaatctgcagacgcaattagccatcgaagggatagacctagatcaaccgagatagtatagaccctgcacgtaaggatcacc 22173294  T
Q  104 gtgcgatcaaca 115  Q
    ||||||||||||    
T  22173295 gtgcgatcaaca 22173306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 19929327 - 19929527
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||| ||||| |||| ||| ||||||||| | ||||||  ||| |||||||| |||||||||||||||||||  |    |||| ||||  ||||||||    
T  19929327 ggatcatcgtgcaatcagcaggtgcagttagtcgtcggaggaatagacctagataaaccgagatagtatagaccatgcttgtaaggatcaacgtgcgatc 19929426  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
      |||||| || |||| |  ||||| | | ||||  | |||| |||| ||||||||||||| |||||||||||||| ||||||| ||||||||| |||||    
T  19929427 ggcaggtgcagtttgacaaccgactaggtcagaacatcccaaaggcctcatcacttgtatagtctacttaagataactaaacgcgacatgaatgttattt 19929526  T
Q  212 a 212  Q
    |    
T  19929527 a 19929527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 7582753 - 7582562
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatataccta-gatcaaccgagatagtatagaccccgaacataagaatcac 102  Q
    ||||||| ||||||||||||||||| ||| |||| ||||||||||||| |||| |||||  |||||| | || |||| |||||||| || |||| ||||     
T  7582753 gcacgtaaggatcaccgtgcgatcagcaggtgcaattagccatcggagggatagacctataatcaactgggagagta-agaccccgcacgtaaggatcat 7582655  T
Q  103 tgtgcgatcaacaggtgtagcttgagattcgacttgattag-aatgttccaacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    ||||||||||||| ||| | |||||    ||||| | |||| || || | |||| || |||| |||||||| ||||| |||||||||||||||    
T  7582654 tgtgcgatcaacatgtgcaacttgatgaccgactaggttagaaacgtccgaacgacctcatctcttgtatagtctacctaagataaataaacg 7582562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 17275999 - 17275909
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcac 102  Q
    |||||||||  |||||| |||||||||||||||||| ||| || | || ||||||||||||||||||||||||| || || |||| |||||    
T  17275999 ggatcaccgcacgatcagcagatgcagttagccatcagagggacagacatagatcaaccgagatagtatagacctcgcacgtaaggatcac 17275909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 17710130 - 17710086
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||    
T  17710130 ggatcaccgtgcgatcaacaggtgcagttagccatcggagggata 17710086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 17336919 - 17336989
Alignment:
Q  144 aatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||||||| | ||||||||||||| ||||| |||||||||| ||||| |||| | || ||||||||    
T  17336919 aatgttccaacggactcatcacttgtatagtctacctaagataaatgaacgcgacattactgttatttaat 17336989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 17710062 - 17710017
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  17710062 ccaacggcctcatcacttgtatagtctacctaagataaataaacgc 17710017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 11253421 - 11253468
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    ||||||| |||||||| || ||||||||| ||||||||||||||||||    
T  11253421 gcacgtaaggatcaccatgtgatcaacaggtgcagttagccatcggag 11253468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 17106900 - 17106858
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaa 192  Q
    ||||||| | ||||||||||||| |||||||||||||||||||    
T  17106900 ccaacgggctcatcacttgtatagtctacttaagataaataaa 17106858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 19492502 - 19492552
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||| ||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  19492502 ccaactgcctcatcacttgtatagtctacctaagataaataaacgcgacat 19492552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 14649263 - 14649230
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcag 38  Q
    |||||||||||||||||||||||||||| |||||    
T  14649263 cacgtatggatcaccgtgcgatcaacaggtgcag 14649230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 19492433 - 19492482
Alignment:
Q  11 tggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacc 60  Q
    ||||||| |||| ||||| ||| |||||||||||||||||| ||||||||    
T  19492433 tggatcatcgtgtgatcagcaggtgcagttagccatcggagggatatacc 19492482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11933872 - 11933828
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcg 48  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||    
T  11933872 gcacgtaaggatcacggtgcgatcaacaagtgcagttagccatcg 11933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 19636398 - 19636462
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    |||||| || ||||||||||||| ||||| |||||||||||||| | |||| | || ||||||||    
T  19636398 ccaacgacctcatcacttgtatagtctacctaagataaataaacacgacattactgttatttaat 19636462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 17156234 - 17156021
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||||| |||||||||||  || | ||||||||||||| |||| |||||||||||||||||||||||| || | | ||||||| ||||  |||||||     
T  17156234 ggatcaccttgcgatcaacaagtgtatttagccatcggag-gatagacctagatcaaccgagatagtatatacactgcacataaggatcatcgtgcgata 17156136  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    |  ||||| |||||||||  | | | | ||||||| | ||||||||| ||||||||||||| |||||||||||| | ||||||  ||||||||| |||||    
T  17156135 agtaggtgcagcttgagaacccattaggttagaatatcccaacggcctcatcacttgtatagtctacttaagattactaaacgtgacatgaatgttattt 17156036  T
Q  212 aattccagcaaaata 226  Q
    ||||||| |||||||    
T  17156035 aattccaacaaaata 17156021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 38083950 - 38083814
Alignment:
Q  64 atcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatc 163  Q
    ||||||||||||||||||||||||| || |||| ||||| |||| |||| ||| || ||||||| |  ||||| | |||||||||  |||||||  ||||    
T  38083950 atcaaccgagatagtatagaccccgcacgtaaggatcaccgtgcaatcagcagatgcagcttgataaccgactaggttagaatgtctcaacggcatcatc 38083851  T
Q  164 acttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  38083850 acttgtatagtctacttaagataactaaacgcaacat 38083814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 12805593 - 12805764
Alignment:
Q  58 acctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggc 157  Q
    |||||||||||| |||||| |||| |||||| ||||||| |||| |||| |||||| ||||| ||||||| |  ||| |   ||||||    |||||| |    
T  12805593 acctagatcaactgagataatatacaccccgcacataaggatcattgtgtgatcaataggtgcagcttgacaaccgaatacgttagaacagcccaacgac 12805692  T
Q  158 cccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaatagat 229  Q
    | |||||||| |||| ||||||||| |||||||||||| ||||||||| |||||||| ||| ||||||||||    
T  12805693 ctcatcacttatatagtctacttaatataaataaacgcgacatgaatgttatttaatgccaacaaaatagat 12805764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 31285798 - 31285881
Alignment:
Q  140 ttagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaa 223  Q
    |||||| || |||| |||| ||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||| ||||    
T  31285798 ttagaacgtcccaatggcctcatcacttgtatagtctacttaagataaataaacgtgacatgaatgttatttaattccaacaaa 31285881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 21325732 - 21325582
Alignment:
Q  64 atcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatc 163  Q
    ||||||||||||||||||||||||| || |||| ||||||||| |||||||| ||| | ||||| |  | | | | ||| || || |||||| || ||||    
T  21325732 atcaaccgagatagtatagaccccgcacgtaaggatcactgtgtgatcaacatgtgcaacttgacaaccaattaggttaaaacgtcccaacgacctcatc 21325633  T
Q  164 acttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
     |||||||| || |||||||||||||||| || |||||| || ||||||||    
T  21325632 gcttgtatagtcaacttaagataaataaaagcgacatgactgttatttaat 21325582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 8143966 - 8143846
Alignment:
Q  104 gtgcgatcaacaggtgtagcttga-gattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
    |||||||||||| ||| | ||||| ||  ||||| | |||||| || |||||| || |||||||| |||| |||||||||||||||||||||||||||||    
T  8143966 gtgcgatcaacatgtgcaacttgatgaaccgactagcttagaacgtcccaacgacctcatcacttatatagtctacttaagataaataaacgcaacatga 8143867  T
Q  203 atggtatttaattccagcaaa 223  Q
    | | || ||||||||| ||||    
T  8143866 acgttacttaattccaacaaa 8143846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 2723499 - 2723705
Alignment:
Q  13 gatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatca 112  Q
    |||||||||||||||||||  |  |||||| ||  |||| |||| || || ||||||||||||||||||||||||| || |||| ||||| ||||| | |    
T  2723499 gatcaccgtgcgatcaacatgtatagttagacaatggagggataaacatatatcaaccgagatagtatagaccccgcacgtaaggatcaccgtgcggtaa 2723598  T
Q  113 acaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattta 212  Q
     |||||| ||||||  |    |||   ||| || || ||||||||| ||||||||||||       ||||||||| |||| || ||||||||| ||||||    
T  2723599 gcaggtgcagcttggcaacaaactaagttacaacgtcccaacggccgcatcacttgtat-------ttaagataactaaatgcgacatgaatgttattta 2723691  T
Q  213 attccagcaaaata 226  Q
    |||||| |||||||    
T  2723692 attccaacaaaata 2723705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 19167827 - 19167781
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  19167827 cacgtaaggatcaccgtgcgatcaacaggtgcagttagccatcggag 19167781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 8882921 - 8882961
Alignment:
Q  160 catcacttgtataatctacttaagataaataaacgcaacat 200  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  8882921 catcacttgtataatctacttaagataaataaacgcgacat 8882961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 4650656 - 4650613
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatc 47  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  4650656 gcacgtaaggatcaccgtgcgatcaacaggtgcagttagccatc 4650613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 8765537 - 8765479
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatataccta 62  Q
    ||||||| ||||||||||||||||| ||  |||||||||||||||||| |||| |||||    
T  8765537 gcacgtaaggatcaccgtgcgatcagcaagtgcagttagccatcggagggatagaccta 8765479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 20430006 - 20429964
Alignment:
Q  152 aacggccccatcacttgtataatctacttaagataaataaacg 194  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  20430006 aacggcctcatcacttgtatagtctacttaagataaataaacg 20429964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 7494906 - 7494967
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||| |||||| || |||||    
T  7494906 ccaacggcttcatcacttgtatagtctacctaagataaataaacgcgacatgactgttattt 7494967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 27413563 - 27413612
Alignment:
Q  2 ctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||||||||||||    
T  27413563 ctgcacgtaaggatcaccgtgtgatcagcaggtgcagttagccatcggag 27413612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 934417 - 934369
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacc 60  Q
    ||||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  934417 ggatcaccgtgcgatcagcatgtgcagttagccatcggagggatatacc 934369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 21302226 - 21302162
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| ||||||||||||| ||||| |||||| |||||| || |||||| || ||||||||    
T  21302226 ccaacggcctcatcacttgtatagtctacctaagattaataaatgcgacatgactgttatttaat 21302162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 7478155 - 7478209
Alignment:
Q  160 catcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||||||| ||||| |||||||||||||||| |||| | || ||||||||    
T  7478155 catcacttgtatagtctacctaagataaataaacgcgacataactgttatttaat 7478209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 12754711 - 12754761
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||| | ||||||||||||| ||||| |||||||||||||||| ||||    
T  12754711 ccaacggactcatcacttgtatagtctacctaagataaataaacgcgacat 12754761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 41508673 - 41508632
Alignment:
Q  151 caacggccccatcacttgtataatctacttaagataaataaa 192  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  41508673 caacggcctcgtcacttgtataatctacctaagataaataaa 41508632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 12373674 - 12373730
Alignment:
Q  71 gagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttga 127  Q
    |||||||||||||||| | || |||||||||| |||| |||| |||||| |||||||    
T  12373674 gagatagtatagacccagcacgtaagaatcacagtgcaatcagcaggtgcagcttga 12373730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 17438221 - 17438273
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
    |||||| || ||||||||| ||| ||||| |||||||||||||||| ||||||    
T  17438221 ccaacgacctcatcacttgcatagtctacctaagataaataaacgcgacatga 17438273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 19171658 - 19171698
Alignment:
Q  154 cggccccatcacttgtataatctacttaagataaataaacg 194  Q
    ||||| ||||||||||||| ||||| |||||||||||||||    
T  19171658 cggcctcatcacttgtatagtctacctaagataaataaacg 19171698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 21825672 - 21825736
Alignment:
Q  160 catcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaa 224  Q
    ||||||||  ||| |||||||| ||||| |||| ||| |||||||| |||||||||||| |||||    
T  21825672 catcacttagatagtctacttacgataactaaatgcagcatgaatgttatttaattccaacaaaa 21825736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 40029 - 39816
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||| |||||||||| ||| | ||||||||||||| || ||||||||||||| | ||| |||||| | ||||||| || |||| ||||| ||||| ||    
T  40029 ggatcatcgtgcgatcagcaggtacagttagccatcgaagggatatacctagataacccgggatagt-tggaccccgtacgtaaggatcaccgtgcgctc 39931  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    | |||||| ||||||| |  ||||| | |||||| || |||||| || ||||||||||||| |||||||||||||| |||||| || |||||||  ||||    
T  39930 agcaggtgcagcttgacaaccgactaggttagaacgtcccaacgaccacatcacttgtatagtctacttaagataactaaacgtaagatgaatgtaattt 39831  T
Q  212 aattccagcaaaata 226  Q
    || |||| |||||||    
T  39830 aactccaacaaaata 39816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 14528576 - 14528371
Alignment:
Q  20 gtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtg 119  Q
    ||||||||| ||| |||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||  || ||||  |||| |||||| || ||||||    
T  14528576 gtgcgatcagcaggtgcagttatccatcagagggatagacctagatcaaccgagatagtatagacccctcacgtaaggttcaccgtgcgaccagcaggtg 14528477  T
Q  120 tagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccag 219  Q
     ||||||| |  ||||| | ||| ||||| ||||  ||| ||||||||||||| |||| ||||||||| ||||||| ||||||||  ||||||| ||||     
T  14528476 cagcttgacaaccgactaggttaaaatgtcccaatagcctcatcacttgtatagtctatttaagataactaaacgcgacatgaat-ttatttaaatccaa 14528378  T
Q  220 caaaata 226  Q
    |||||||    
T  14528377 caaaata 14528371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 19787178 - 19786976
Alignment:
Q  12 ggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatc 111  Q
    |||||||||||| |||| ||  | |||||||||||||||| |||| |||||||||||| |||||||||||||||||| || |||| |||   ||||||||    
T  19787178 ggatcaccgtgcaatcagcatgtacagttagccatcggagggataaacctagatcaactgagatagtatagaccccgtacgtaaggatcgtcgtgcgatc 19787079  T
Q  112 aacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattt 211  Q
    | |||||| | ||||| |  | ||| | ||||||  | ||||||||| |||||| |||||| || ||||||||||| ||||||| ||||||||| | |||    
T  19787078 agcaggtgcatcttgacaaccaactaggttagaacatcccaacggcctcatcacctgtatagtcgacttaagataactaaacgcgacatgaatgcttttt 19786979  T
Q  212 aat 214  Q
    |||    
T  19786978 aat 19786976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 24645156 - 24645073
Alignment:
Q  140 ttagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaa 223  Q
    |||||| || ||||||||| ||||||||||||| | |||||||||||| ||||||| ||||||| | |||||||||||| ||||    
T  24645156 ttagaacgtcccaacggcctcatcacttgtatagtatacttaagataactaaacgcgacatgaaagttatttaattccaacaaa 24645073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 7984021 - 7983909
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactg 104  Q
    |||||| ||||||| |||||||||  || ||||||||| |||||||| |||| ||| || |||||||| ||| ||||||||||| || |||| |||||||    
T  7984021 cacgtaaggatcactgtgcgatcat-aggtgcagttagacatcggagggataaaccaagttcaaccgatataatatagaccccgcacgtaaggatcactg 7983923  T
Q  105 tgcgatcaacaggt 118  Q
    ||| |||| |||||    
T  7983922 tgcaatcagcaggt 7983909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 25182125 - 25182192
Alignment:
Q  21 tgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccg 88  Q
    |||||||| | | ||| ||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  25182125 tgcgatcagctggtgctgttagccatcaaagtgatagacctagatcaaccgagatagtatagaccccg 25182192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 13314795 - 13314848
Alignment:
Q  161 atcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||    
T  13314795 atcacttgtatagtctacctaagataaataaacgcgacatgaatgttatttaat 13314848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 34497507 - 34497358
Alignment:
Q  65 tcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatca 164  Q
    |||||||||||||||||||||||  || |||| ||||  ||| ||||| || ||| | ||||| | |||| | | |||||| || |||||| || |||||    
T  34497507 tcaaccgagatagtatagaccccacacgtaaggatcatcgtgtgatcagcatgtgcatcttgacaatcgattaggttagaacgtcccaacgacctcatca 34497408  T
Q  165 cttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
     || |||| | ||||||||||||||||| |  ||||||||| ||||||||    
T  34497407 attttatagtttacttaagataaataaatgtgacatgaatgttatttaat 34497358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 26394490 - 26394554
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| |||| | || ||||||||    
T  26394490 ccaacggcctcatcacttgtatagtctacctaagataaataaacgcgacattactgttatttaat 26394554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 24723401 - 24723451
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  24723401 ccaacggcctcatcacttgtatagtctacctaagataaataaacgcgacat 24723451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 24110457 - 24110510
Alignment:
Q  147 gttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||| || ||||||||||||| ||||| |||||||||||||||| ||||    
T  24110457 gttccaacgacctcatcacttgtatagtctacctaagataaataaacgcgacat 24110510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 24269908 - 24269855
Alignment:
Q  147 gttccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||| || ||||||||||||| ||||| |||||||||||||||| ||||    
T  24269908 gttccaacgacctcatcacttgtatagtctacctaagataaataaacgcgacat 24269855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 16404332 - 16404288
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcg 48  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||    
T  16404332 gcacgtaaggatcatcgtgcgatcaacaggtgcagttagccatcg 16404288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 17101620 - 17101672
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||||| ||||||| ||||||||| |||||||||||||||||| ||| ||||    
T  17101620 gcacgtaaggatcactgtgcgatcagcagatgcagttagccatcagagggata 17101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 24723307 - 24723357
Alignment:
Q  6 acgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||| ||||||||||||||||| ||| || ||||||||||||||| ||||    
T  24723307 acgtaaggatcaccgtgcgatcagcaggtgtagttagccatcggagggata 24723357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 24114074 - 24114119
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
    |||| |||| ||||||||||||| ||||| ||||||||||||||||    
T  24114074 ccaatggcctcatcacttgtatagtctacctaagataaataaacgc 24114119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 25182234 - 25182283
Alignment:
Q  166 ttgtataatctacttaagataaataaacgcaacatgaatggtatttaatt 215  Q
    ||||||| |||||||||||||| ||||||  ||||||||| |||||||||    
T  25182234 ttgtatagtctacttaagataactaaacgtgacatgaatgttatttaatt 25182283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 37528403 - 37528484
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagacc 85  Q
    |||||||  ||||| |||||||||||||| |||||||||| ||| ||| |||| || || |||||| || ||| ||||||||    
T  37528403 gcacgtaaagatcatcgtgcgatcaacaggtgcagttagcaatcagagggatagacgtaaatcaactgaaataatatagacc 37528484  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 18448256 - 18448308
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    ||||||| ||||||||||||||||| ||| |||||||| ||||| ||| ||||    
T  18448256 gcacgtaaggatcaccgtgcgatcagcaggtgcagttaaccatcagagggata 18448308  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 19264462 - 19264418
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcg 48  Q
    ||||||| | ||||||||||||||| ||| |||||||||||||||    
T  19264462 gcacgtaagaatcaccgtgcgatcatcaggtgcagttagccatcg 19264418  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 29382152 - 29382204
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatga 202  Q
    ||||||||| |||||||| |||| ||||| ||||||||||||| || ||||||    
T  29382152 ccaacggcctcatcacttctatagtctacctaagataaataaatgcgacatga 29382204  T

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Target: scaffold0102 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 195
Target Start/End: Complemental strand, 35947 - 35800
Alignment:
Q  48 ggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtgtagcttga-gattcgacttgattag-aa 145  Q
    |||| |||| |||||| ||||| |||||||||||||||||| ||||||| |||| | ||||||||||||||| ||||||| ||||  | | | |||| ||    
T  35947 ggagggatagacctag-tcaactgagatagtatagaccccgcacataaggatcattatgcgatcaacaggtgcagcttgatgatt-aattaggttagtaa 35850  T
Q  146 tgttccaacggccccatcacttgtataatctacttaagataaataaacgc 195  Q
     || |||| ||||  |||||||||||| ||||| ||||||||||||||||    
T  35849 cgtcccaatggcctaatcacttgtatagtctacctaagataaataaacgc 35800  T

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Target: scaffold0062 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 42874 - 43078
Alignment:
Q  5 cacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagt-gatatacctagatcaaccgagatagtatagaccccgaacataagaatcact 103  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||  ||| |||| | | ||||||||||||||| ||||||||||| || |||| |||       
T  42874 cacgtaaggatcaccgtgcgatcatcaggtgcaattagccatc--agtagataaatcgagatcaaccgagataatatagaccccgcacgtaaggatcgtc 42971  T
Q  104 gtgcgatcaacaggtgtagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaa 203  Q
     ||| ||||||||||| || |||| |  | ||| | ||||||  | ||||| ||| ||||| ||  |||||||||||||||||| |||||   |||||||    
T  42972 atgcaatcaacaggtgcagtttgacaaccaactaggttagaacttcccaacagcctcatcagttacataatctacttaagataactaaacttgacatgaa 43071  T
Q  204 tggtatt 210  Q
    || ||||    
T  43072 tgttatt 43078  T

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Target: scaffold0622 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 1024 - 958
Alignment:
Q  160 catcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    |||||||| |||| |||| ||||||||| ||||||| ||||||||| |||||||||||| |||||||    
T  1024 catcacttttatagtctaattaagataattaaacgcgacatgaatgttatttaattccaacaaaata 958  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 55297 - 55107
Alignment:
Q  20 gtgcgatcaacagatgcagttagccatcggagtgatatacctagatcaaccgagatagtatagaccccgaacataagaatcactgtgcgatcaacaggtg 119  Q
    |||||||||  || ||||||||||||||| |  |||| ||||| |||||| |||||| ||||||||| |    |||  ||||  |||||| |||||||||    
T  55297 gtgcgatcagaaggtgcagttagccatcgaaaggatagacctaaatcaactgagataatatagaccctgtg--taacgatcaaagtgcgaccaacaggtg 55200  T
Q  120 tagcttgagattcgacttgattagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtattta 212  Q
     | ||||| |  ||||| | |||| | || ||||||||| ||||||||||||| | |||||| ||| | ||||||| ||||||||| ||||||    
T  55199 catcttgacaaccgactaggttaggacgtcccaacggcctcatcacttgtatagtatacttaggatgactaaacgcgacatgaatgttattta 55107  T

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Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16035 - 15980
Alignment:
Q  1 cctgcacgtatggatcaccgtgcgatcaacagatgcagttagccatcggagtgata 56  Q
    |||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||    
T  16035 cctgcacgtaaggaccaccgtgcgatcaacatgtgcagttagccatcggagggata 15980  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 89637 - 89720
Alignment:
Q  140 ttagaatgttccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaa 223  Q
    |||||| || |||||| || ||||||||  ||| |||||||||||||| |||| || ||||||||| |||||||||||| ||||    
T  89637 ttagaacgtcccaacgacctcatcacttagatagtctacttaagataactaaatgcgacatgaatgttatttaattccaacaaa 89720  T

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Target: scaffold0427 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 2612 - 2686
Alignment:
Q  152 aacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaattccagcaaaata 226  Q
    ||||||| ||||| ||||| | |||||| ||||||| ||||||| || |||||| |||||||||||| |||||||    
T  2612 aacggcctcatcatttgtacagtctactaaagataactaaacgcgacctgaatgttatttaattccaacaaaata 2686  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 3822 - 3772
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacat 200  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  3822 ccaacggcctcatcacttgtatagtctacctaagataaataaacgcgacat 3772  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 76835 - 76790
Alignment:
Q  6 acgtatggatcaccgtgcgatcaacagatgcagttagccatcggag 51  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  76835 acgtaaggatcaccgtgcgatcagcaggtgcagttagccatcggag 76790  T

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Target: scaffold0134 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 11468 - 11404
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| ||||||||||||| | |||  ||||||||||||||| |||||| || ||||||||    
T  11468 ccaacggcctcatcacttgtatagtttacccaagataaataaacgcgacatgactgttatttaat 11404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 81678 - 81614
Alignment:
Q  150 ccaacggccccatcacttgtataatctacttaagataaataaacgcaacatgaatggtatttaat 214  Q
    ||||||||| ||||||||||||| | |||  ||||||||||||| |||||||| || ||||||||    
T  81678 ccaacggcctcatcacttgtatagtttaccaaagataaataaacacaacatgactgttatttaat 81614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 619 - 654
Alignment:
Q  157 ccccatcacttgtataatctacttaagataaataaa 192  Q
    |||||||||||||||| |||||||||||||||||||    
T  619 ccccatcacttgtatagtctacttaagataaataaa 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 862 - 818
Alignment:
Q  4 gcacgtatggatcaccgtgcgatcaacagatgcagttagccatcg 48  Q
    ||||||| |||||| |||||||||| ||| |||||||||||||||    
T  862 gcacgtaaggatcatcgtgcgatcagcaggtgcagttagccatcg 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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