View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0654_low_10 (Length: 289)
Name: NF0654_low_10
Description: NF0654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0654_low_10 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 16386083 - 16385834
Alignment:
| Q |
30 |
ctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattccgttggcggccgataactcgatcagttatgaccgagaatttac |
129 |
Q |
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| T |
16386083 |
ctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattccgttggcggccgataactcgatcagttatgaccgagaatttac |
16385984 |
T |
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| Q |
130 |
cagccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaaaggaccaactattgatgttatgaacactgttgtttctgctat |
229 |
Q |
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| T |
16385983 |
cggccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaaagaaccaactattgatgttatgaacactgttgtttctgctat |
16385884 |
T |
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| Q |
230 |
tgcaatggattacccttgtaataaactttctatttatctttctgatgatg |
279 |
Q |
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| T |
16385883 |
tgcaatggattacccttgtaataaactttctatttatctttctgatgatg |
16385834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 11750 - 11999
Alignment:
| Q |
30 |
ctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattccgttggcggccgataactcgatcagttatgaccgagaatttac |
129 |
Q |
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||||||||| |||||||| ||||| | |||||| ||||||||| | ||||||||||||||||| ||| | ||| ||| ||||||||||||||||| |||| |
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| T |
11750 |
ctaatgacaatagctgagattattctatcatttttgtggtttttcaaccaagcattccgttggaggctggtaaatcgttcagttatgaccgagaaattac |
11849 |
T |
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| Q |
130 |
cagccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaaaggaccaactattgatgttatgaacactgttgtttctgctat |
229 |
Q |
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| T |
11850 |
cgcccgacgagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggttgatgttatgaacactgttatttctgctat |
11949 |
T |
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| Q |
230 |
tgcaatggattacccttgtaataaactttctatttatctttctgatgatg |
279 |
Q |
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| T |
11950 |
tgcaatggactacccttctaataaactttctatttatctttctgatgatg |
11999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 17589235 - 17588986
Alignment:
| Q |
30 |
ctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattccgttggcggccgataactcgatcagttatgaccgagaatttac |
129 |
Q |
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||||||||| |||||||| ||||| | |||||||||||| ||| | ||||||| ||||||||||||||| | ||||| ||||| ||||||||||| |||| |
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| T |
17589235 |
ctaatgacattagctgagattattctatcatttatgtgggttttcaaccaagcgttccgttggcggccggtgactcgttcagtgatgaccgagaaattac |
17589136 |
T |
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| Q |
130 |
cagccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaaaggaccaactattgatgttatgaacactgttgtttctgctat |
229 |
Q |
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| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | || |||||||||||||||||||||||||| |
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| T |
17589135 |
cggctgaagagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggtagaagttatgaacactgttgtttctgctat |
17589036 |
T |
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| Q |
230 |
tgcaatggattacccttgtaataaactttctatttatctttctgatgatg |
279 |
Q |
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||| |||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
17589035 |
tgctatggattaccctcctgataaactttctatttatctttctgatgatg |
17588986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 270141 - 270390
Alignment:
| Q |
30 |
ctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattccgttggcggccgataactcgatcagttatgaccgagaatttac |
129 |
Q |
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|||||||||||||||||||||||| | ||| | ||||||||| | ||||||||| ||| ||||||||| | | |||||| || ||| |||||| |||| |
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| T |
270141 |
ctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcggccggtgagtcgatcggtaatggtcgagaaattac |
270240 |
T |
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| Q |
130 |
cagccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaaaggaccaactattgatgttatgaacactgttgtttctgctat |
229 |
Q |
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| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |
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| T |
270241 |
cggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacactgttgtttctgctat |
270340 |
T |
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| Q |
230 |
tgcaatggattacccttgtaataaactttctatttatctttctgatgatg |
279 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
270341 |
tgcaatggattacccttctaataagctttctatttatctttctgatgatg |
270390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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