View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0654_low_11 (Length: 278)

Name: NF0654_low_11
Description: NF0654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0654_low_11
NF0654_low_11
[»] chr5 (14 HSPs)
chr5 (1-194)||(38144528-38144721)
chr5 (1-185)||(28370055-28370239)
chr5 (1-185)||(19512256-19512441)
chr5 (8-190)||(22751018-22751201)
chr5 (76-190)||(23528577-23528690)
chr5 (121-185)||(18407944-18408008)
chr5 (130-194)||(22438738-22438803)
chr5 (121-185)||(23111200-23111264)
chr5 (131-186)||(19236900-19236955)
chr5 (133-186)||(22461158-22461211)
chr5 (133-186)||(22467782-22467835)
chr5 (130-194)||(42961566-42961630)
chr5 (131-186)||(20781744-20781799)
chr5 (157-186)||(17021913-17021942)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-186)||(111556-111741)
scaffold0026 (8-194)||(11842-12029)
[»] chr8 (15 HSPs)
chr8 (1-186)||(44477493-44477678)
chr8 (1-186)||(44492651-44492836)
chr8 (1-183)||(8727735-8727918)
chr8 (8-194)||(23866491-23866678)
chr8 (76-194)||(17054537-17054654)
chr8 (1-94)||(27940946-27941039)
chr8 (121-185)||(23482053-23482117)
chr8 (129-185)||(18614271-18614327)
chr8 (130-194)||(14056555-14056619)
chr8 (129-185)||(39364919-39364975)
chr8 (131-185)||(29643386-29643440)
chr8 (130-191)||(25111976-25112037)
chr8 (131-186)||(24320670-24320725)
chr8 (129-185)||(21931696-21931752)
chr8 (130-194)||(27940843-27940907)
[»] chr3 (26 HSPs)
chr3 (1-185)||(9534198-9534382)
chr3 (1-186)||(23370505-23370691)
chr3 (8-185)||(14762758-14762936)
chr3 (8-183)||(20247791-20247967)
chr3 (1-183)||(24192825-24193009)
chr3 (8-183)||(38310802-38310978)
chr3 (5-194)||(16801459-16801648)
chr3 (76-186)||(24933828-24933937)
chr3 (104-194)||(41455089-41455178)
chr3 (4-183)||(55499104-55499285)
chr3 (124-185)||(18929239-18929300)
chr3 (121-185)||(17240513-17240577)
chr3 (131-186)||(13302240-13302295)
chr3 (131-186)||(13323787-13323842)
chr3 (131-186)||(12033444-12033499)
chr3 (131-186)||(13312896-13312951)
chr3 (131-186)||(17131732-17131787)
chr3 (131-186)||(51301589-51301644)
chr3 (76-186)||(10389443-10389553)
chr3 (76-186)||(10414532-10414642)
chr3 (76-186)||(10421202-10421312)
chr3 (131-186)||(14865846-14865901)
chr3 (151-186)||(23392819-23392854)
chr3 (129-183)||(16801027-16801081)
chr3 (150-186)||(2247649-2247685)
chr3 (135-191)||(10833303-10833359)
[»] chr2 (17 HSPs)
chr2 (1-185)||(6483588-6483772)
chr2 (1-185)||(6487055-6487239)
chr2 (5-185)||(19661454-19661634)
chr2 (5-194)||(26583702-26583890)
chr2 (1-185)||(23101463-23101648)
chr2 (1-183)||(23089057-23089240)
chr2 (1-183)||(23878878-23879060)
chr2 (76-186)||(5706023-5706133)
chr2 (121-185)||(23265133-23265197)
chr2 (121-185)||(23280201-23280265)
chr2 (124-185)||(21908353-21908414)
chr2 (129-185)||(24661576-24661632)
chr2 (131-186)||(10577-10632)
chr2 (131-186)||(25180929-25180984)
chr2 (131-186)||(26885183-26885237)
chr2 (133-186)||(23168298-23168351)
chr2 (133-186)||(23579555-23579608)
[»] chr7 (28 HSPs)
chr7 (5-189)||(14422858-14423043)
chr7 (1-185)||(16009447-16009631)
chr7 (8-190)||(18873237-18873420)
chr7 (8-181)||(10895795-10895969)
chr7 (8-185)||(15168052-15168230)
chr7 (8-194)||(12709835-12710022)
chr7 (8-194)||(13122906-13123093)
chr7 (6-194)||(13743584-13743772)
chr7 (9-194)||(12590635-12590818)
chr7 (5-183)||(16677167-16677348)
chr7 (5-183)||(17651403-17651584)
chr7 (76-194)||(13007378-13007495)
chr7 (130-194)||(21230951-21231015)
chr7 (130-185)||(11382871-11382926)
chr7 (130-185)||(11389348-11389403)
chr7 (130-186)||(20311051-20311107)
chr7 (122-185)||(13679485-13679548)
chr7 (131-186)||(2971254-2971309)
chr7 (131-186)||(20906461-20906516)
chr7 (131-185)||(11311059-11311113)
chr7 (150-191)||(831628-831669)
chr7 (150-191)||(1196808-1196849)
chr7 (150-191)||(34958578-34958619)
chr7 (129-185)||(46625961-46626017)
chr7 (131-186)||(29181109-29181164)
chr7 (133-186)||(31155396-31155449)
chr7 (130-194)||(148619-148683)
chr7 (134-186)||(16091078-16091130)
[»] scaffold0553 (1 HSPs)
scaffold0553 (1-186)||(10195-10381)
[»] scaffold0544 (1 HSPs)
scaffold0544 (1-186)||(1525-1711)
[»] chr6 (31 HSPs)
chr6 (1-185)||(23839068-23839253)
chr6 (1-186)||(10986180-10986366)
chr6 (5-185)||(4477731-4477912)
chr6 (8-194)||(29614138-29614325)
chr6 (5-194)||(18800311-18800501)
chr6 (8-185)||(23057815-23057993)
chr6 (52-194)||(930087-930229)
chr6 (76-194)||(12168309-12168426)
chr6 (76-194)||(19287218-19287335)
chr6 (76-194)||(19785861-19785978)
chr6 (76-194)||(19878402-19878519)
chr6 (76-194)||(19884178-19884295)
chr6 (1-183)||(21565214-21565397)
chr6 (103-186)||(34646660-34646743)
chr6 (103-186)||(34639986-34640069)
chr6 (80-186)||(25469704-25469808)
chr6 (130-194)||(24512835-24512899)
chr6 (133-185)||(9187498-9187550)
chr6 (129-185)||(25348486-25348542)
chr6 (129-183)||(25598643-25598697)
chr6 (129-185)||(25397172-25397228)
chr6 (121-186)||(31252413-31252478)
chr6 (129-185)||(19471335-19471391)
chr6 (129-183)||(2286769-2286823)
chr6 (97-186)||(11288668-11288758)
chr6 (151-185)||(18659450-18659484)
chr6 (151-185)||(24441673-24441707)
chr6 (133-186)||(15458492-15458545)
chr6 (133-186)||(15465087-15465140)
chr6 (158-186)||(28288509-28288537)
chr6 (151-191)||(29415551-29415591)
[»] chr1 (16 HSPs)
chr1 (1-185)||(20437024-20437209)
chr1 (76-194)||(41111981-41112098)
chr1 (121-185)||(32651563-32651627)
chr1 (121-185)||(18712790-18712854)
chr1 (130-185)||(19663517-19663572)
chr1 (129-185)||(20805320-20805376)
chr1 (130-185)||(11158093-11158148)
chr1 (129-183)||(10811785-10811839)
chr1 (131-186)||(20851132-20851187)
chr1 (131-186)||(20857759-20857814)
chr1 (131-186)||(21706276-21706331)
chr1 (131-186)||(21710818-21710873)
chr1 (155-185)||(24476350-24476380)
chr1 (155-185)||(25091418-25091448)
chr1 (151-184)||(18271338-18271371)
chr1 (151-184)||(18275992-18276025)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-194)||(111758-111946)
[»] scaffold1773 (1 HSPs)
scaffold1773 (8-193)||(1055-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (8-193)||(50056-50241)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-194)||(11211-11405)
[»] scaffold0924 (1 HSPs)
scaffold0924 (8-194)||(742-930)
[»] scaffold0058 (1 HSPs)
scaffold0058 (6-194)||(167-354)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-183)||(14398-14582)
[»] scaffold0117 (2 HSPs)
scaffold0117 (9-194)||(8566-8751)
scaffold0117 (9-194)||(1889-2074)
[»] chr4 (16 HSPs)
chr4 (9-194)||(8045824-8046009)
chr4 (8-194)||(11847984-11848177)
chr4 (76-186)||(53483650-53483760)
chr4 (130-186)||(15408139-15408195)
chr4 (129-185)||(8834895-8834951)
chr4 (129-185)||(13888641-13888697)
chr4 (131-183)||(14486661-14486713)
chr4 (129-185)||(15245215-15245271)
chr4 (129-180)||(22724691-22724742)
chr4 (150-191)||(15747551-15747592)
chr4 (129-185)||(15308120-15308176)
chr4 (131-186)||(16146830-16146885)
chr4 (131-186)||(27906266-27906321)
chr4 (155-185)||(15069781-15069811)
chr4 (155-185)||(15076381-15076411)
chr4 (129-186)||(14912081-14912138)
[»] scaffold0154 (1 HSPs)
scaffold0154 (5-194)||(30730-30921)
[»] scaffold0090 (1 HSPs)
scaffold0090 (6-194)||(18043-18233)
[»] scaffold0476 (1 HSPs)
scaffold0476 (1-183)||(3295-3479)
[»] scaffold0077 (1 HSPs)
scaffold0077 (1-183)||(3624-3807)
[»] scaffold0796 (2 HSPs)
scaffold0796 (76-191)||(1727-1841)
scaffold0796 (76-191)||(5750-5864)
[»] scaffold0456 (2 HSPs)
scaffold0456 (103-190)||(904-991)
scaffold0456 (103-190)||(8049-8136)
[»] scaffold0129 (1 HSPs)
scaffold0129 (76-192)||(45268-45384)
[»] scaffold0222 (1 HSPs)
scaffold0222 (121-185)||(16811-16875)
[»] scaffold0107 (1 HSPs)
scaffold0107 (130-194)||(40523-40587)
[»] scaffold0004 (2 HSPs)
scaffold0004 (121-185)||(116887-116951)
scaffold0004 (151-184)||(60441-60474)
[»] scaffold0310 (1 HSPs)
scaffold0310 (130-194)||(17643-17708)
[»] scaffold0461 (1 HSPs)
scaffold0461 (121-185)||(8-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (121-185)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (121-185)||(101928-101992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (130-186)||(135473-135529)
[»] scaffold0235 (1 HSPs)
scaffold0235 (132-194)||(22584-22646)
[»] scaffold0124 (2 HSPs)
scaffold0124 (130-185)||(34276-34331)
scaffold0124 (129-186)||(35438-35495)
[»] scaffold0815 (1 HSPs)
scaffold0815 (134-194)||(1453-1513)
[»] scaffold0138 (1 HSPs)
scaffold0138 (129-185)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (122-185)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (130-185)||(14997-15052)
[»] scaffold2054 (1 HSPs)
scaffold2054 (97-194)||(680-778)
[»] scaffold0096 (1 HSPs)
scaffold0096 (129-189)||(39503-39563)
[»] scaffold0348 (1 HSPs)
scaffold0348 (131-186)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (131-186)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (131-186)||(135438-135493)
[»] scaffold0001 (1 HSPs)
scaffold0001 (131-186)||(493028-493082)
[»] scaffold1318 (1 HSPs)
scaffold1318 (131-185)||(1913-1967)
[»] scaffold0790 (1 HSPs)
scaffold0790 (157-199)||(5480-5522)
[»] scaffold0609 (1 HSPs)
scaffold0609 (121-186)||(5857-5922)
[»] scaffold0335 (1 HSPs)
scaffold0335 (129-185)||(2628-2684)
[»] scaffold0261 (1 HSPs)
scaffold0261 (131-186)||(23569-23624)
[»] scaffold0053 (1 HSPs)
scaffold0053 (131-186)||(79490-79545)
[»] scaffold0481 (1 HSPs)
scaffold0481 (139-184)||(676-721)
[»] scaffold0249 (1 HSPs)
scaffold0249 (133-186)||(13894-13947)
[»] scaffold0600 (1 HSPs)
scaffold0600 (129-185)||(732-788)
[»] scaffold0180 (1 HSPs)
scaffold0180 (136-185)||(11630-11681)
[»] scaffold0034 (1 HSPs)
scaffold0034 (131-183)||(73285-73337)
[»] scaffold0031 (2 HSPs)
scaffold0031 (129-185)||(121902-121958)
scaffold0031 (129-185)||(132778-132834)
[»] scaffold0028 (1 HSPs)
scaffold0028 (133-185)||(69749-69801)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 38144721 - 38144528
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  38144721 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctca 38144622  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144621 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 38144528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 28370239 - 28370055
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  28370239 acagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctca 28370140  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28370139 atttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 19512256 - 19512441
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  19512256 acagtatagattaagttttcattctaaacattacgttacaatagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctca 19512355  T
Q  101 atttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19512356 atttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 22751018 - 22751201
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  22751018 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 22751117  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 190  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  22751118 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 23528577 - 23528690
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23528577 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 23528675  T
Q  176 ccttaccttagtttt 190  Q
    |||||||||||||||    
T  23528676 ccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 22438803 - 22438738
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag-ttttgcag 194  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcag 22438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 42961566 - 42961630
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||| ||| ||||| || |||||  | ||| ||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcag 42961630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 20781744 - 20781799
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||| ||| ||||| |||||||| ||||| || ||||||||||||||    
T  20781744 aattttcagaaatcatatattataattattgaaagataatcccacccttaccttag 20781799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 17021942 - 17021913
Alignment:
Q  157 tattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||||||||||||||||    
T  17021942 tattgagagatagtctcacccttaccttag 17021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 111556 - 111741
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  111556 acagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctca 111655  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111656 atttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 12029 - 11842
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| || |||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||| ||||||||||    
T  12029 agattaagttttcattctgaagattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttat 11930  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11929 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 11842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 44477493 - 44477678
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  44477493 acagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctca 44477592  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44477593 atttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 44492651 - 44492836
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  44492651 acagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctca 44492750  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44492751 atttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 8727918 - 8727735
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  8727918 acagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccctca 8727819  T
Q  101 atttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  8727818 atttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 23866491 - 23866678
Alignment:
Q  8 agattaagttttcattctaaacattacattacaa-tagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattta 105  Q
    |||||||||||  ||||| ||||||| ||||||| ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||||||||    
T  23866491 agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta 23866590  T
Q  106 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23866591 ttttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcag 23866678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 17054537 - 17054654
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17054537 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 17054635  T
Q  176 ccttaccttagttttgcag 194  Q
    ||||||||| |||||||||    
T  17054636 ccttaccttggttttgcag 17054654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 27941039 - 27940946
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaa 94  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  27941039 acagtatagattaaattttcattctgaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 14056619 - 14056555
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||| |||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcag 14056555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 25111976 - 25112037
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 191  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttg 25112037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 27940907 - 27940843
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||| ||| ||||| || |||||  | ||| ||||||||||||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcag 27940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 9534198 - 9534382
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  9534198 acagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccctca 9534297  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9534298 atttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 23370691 - 23370505
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  23370691 acagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccaca 23370592  T
Q  101 atttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23370591 atttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 14762936 - 14762758
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  14762936 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 14762837  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14762836 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 20247967 - 20247791
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  20247967 agattaagttttcattctgaacattatattacaagaaaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 20247868  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20247867 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 24192825 - 24193009
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctc 99  Q
    |||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||  |||| || ||||||||||||||||||||||||    
T  24192825 acagcatagattaagttttcattctgaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctc 24192924  T
Q  100 aatttattttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192925 aatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 38310978 - 38310802
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  38310978 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 38310879  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
     |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38310878 cttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 16801648 - 16801459
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 103  Q
    ||||| |||||  |||||||||||||| ||||||||  | | |||||||||||| ||| |||| | ||||| |||||||||||| |||||||| ||||||    
T  16801648 tataggttaagaattcattctaaacatcacattacagcatatttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaatt 16801550  T
Q  104 t-attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    | || ||| |||  || ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  16801549 ttatcttcaaaagctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttgcag 16801459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 24933937 - 24933828
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    |||||||||||||||||||   |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24933937 aatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 24933839  T
Q  176 ccttaccttag 186  Q
    |||||||||||    
T  24933838 ccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 41455178 - 41455089
Alignment:
Q  104 tattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 41455089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 55499285 - 55499104
Alignment:
Q  4 gtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatt 103  Q
    |||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  55499285 gtatagattaagatttcattccgaacatcacattacaacataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatt 55499186  T
Q  104 tattttccaaaattatgcaattaggtcaatttt-cagaaattatagattat-gattattgagagatagtctcacccttacct 183  Q
    |  |   |||  ||| ||| ||||||||||||| | ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  55499185 ttatcctcaaggttaagcagttaggtcaattttcccgaaattacatattatctattaatgagagatagtctcacccttacct 55499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  124 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 10389553 - 10389443
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    |||||||||||||||||||   |||  ||||| |  |||| ||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| || |||    
T  10389553 aatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccac 10389454  T
Q  176 ccttaccttag 186  Q
    |||||||||||    
T  10389453 ccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 10414642 - 10414532
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    |||||||||||||||||||   |||  ||||| |  |||| ||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| || |||    
T  10414642 aatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccac 10414543  T
Q  176 ccttaccttag 186  Q
    |||||||||||    
T  10414542 ccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 10421312 - 10421202
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    |||||||||||||||||||   |||  ||||| |  |||| ||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| || |||    
T  10421312 aatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccac 10421213  T
Q  176 ccttaccttag 186  Q
    |||||||||||    
T  10421212 ccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 14865846 - 14865901
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  14865846 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 14865901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 23392854 - 23392819
Alignment:
Q  151 tatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23392854 tatgattattgagagttagtctcacccttaccttag 23392819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 16801027 - 16801081
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||||    
T  16801027 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacct 16801081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 2247685 - 2247649
Alignment:
Q  150 ttatgattattgagagatagtctcacccttaccttag 186  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  2247685 ttataattattgagagttagtctcacccttaccttag 2247649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 10833359 - 10833303
Alignment:
Q  135 ttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 191  Q
    ||||||| ||||| | |||||||| |||  | |||||||||||||||||||||||||    
T  10833359 ttcagaatttatacactatgattactgaatgttagtctcacccttaccttagttttg 10833303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 6483588 - 6483772
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  6483588 acagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctca 6483687  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483688 atttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 6487055 - 6487239
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  6487055 acagtatagattaagttttcattctaaacattacgttacaacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctca 6487154  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6487155 atttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 19661634 - 19661454
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 104  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  19661634 tatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 19661535  T
Q  105 attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  19661534 atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 26583702 - 26583890
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 104  Q
    ||||||||| |  |||||||| ||||| || |||||| | | |||||||||||| ||||| | ||||||| |||||||||||| ||||||||||||||||    
T  26583702 tatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattaccctttcccctcagaatcatcatcaagccctaaccctcaattt 26583801  T
Q  105 attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26583802 attttccaaaactatgcaattaggtcaa-tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 26583890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 23101648 - 23101463
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||| ||||||||  ||| | ||||||||| | |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  23101648 acagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctca 23101549  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacctta 185  Q
    ||||  |   |||  |||  ||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||||    
T  23101548 attttatcctcaaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 23089240 - 23089057
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||| ||||||||  ||| | ||||||||| | |||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||    
T  23089240 acagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctca 23089141  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 183  Q
    ||||  |   |||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  23089140 attttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 23878878 - 23879060
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaata-cccatacccctcataatcatcatcaaaccctaaccctc 99  Q
    ||||||||||||||| ||||||||| ||||| ||||||||| | |||||||||||||| || ||||| ||||||| |||||||| | |||||||||||||    
T  23878878 acagtatagattaagatttcattctgaacatcacattacaacataattaacatgatcattaccccattcccctcagaatcatcaac-aaccctaaccctc 23878976  T
Q  100 aatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    |||||| |   |||  ||| |||||||||||||||||  ||||||||| || || |||| ||||||||||||||||||||||||    
T  23878977 aatttaatcctcaaggttaagcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 5706133 - 5706023
Alignment:
Q  76 aatcatcatcaaaccctaaccctca-atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 174  Q
    |||||||||||||||||||   ||| |||  ||||| |||| ||| |||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  5706133 aatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagtctca 5706035  T
Q  175 cccttaccttag 186  Q
    ||||||||||||    
T  5706034 cccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  124 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 26885183 - 26885237
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| |||| ||||||||| ||||| || ||||||||||||||    
T  26885183 aattttcagaaattatacatta-gattattgaaagataatcccacccttaccttag 26885237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 23168351 - 23168298
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| |||||||| | ||| ||||| || ||||||||||||||    
T  23168351 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttag 23168298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 23579608 - 23579555
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| |||||||| | ||| ||||| || ||||||||||||||    
T  23579608 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttag 23579555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 14422858 - 14423043
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 104  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  14422858 tatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 14422957  T
Q  105 attttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 189  Q
    || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14422958 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 16009447 - 16009631
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||    
T  16009447 acagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaacccaca 16009546  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16009547 atttatcttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 18873237 - 18873420
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  18873237 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 18873336  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 190  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  18873337 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 10895969 - 10895795
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttatt 107  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||     
T  10895969 agattaagttttcattctgaacattatattacaagagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatc 10895870  T
Q  108 ttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 181  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10895869 ttccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 15168052 - 15168230
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  15168052 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 15168151  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15168152 cttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 12710022 - 12709835
Alignment:
Q  8 agattaagttttcattctaaacattacattacaa-tagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattta 105  Q
    |||||||||||  ||||| ||||||| ||||||| ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||||||||    
T  12710022 agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta 12709923  T
Q  106 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12709922 ttttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcag 12709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 13123093 - 13122906
Alignment:
Q  8 agattaagttttcattctaaacattacattacaa-tagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattta 105  Q
    |||||||||||  ||||| ||||||| ||||||| ||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||||||||    
T  13123093 agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta 13122994  T
Q  106 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13122993 ttttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcag 13122906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 13743584 - 13743772
Alignment:
Q  6 atagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaattt 104  Q
    ||||||||||| |||| ||| ||||  | | ||||| | |||||||||||||| |||||||  | || ||||||||||||||||||||||||||||||||    
T  13743584 atagattaagtcttcaatctgaacagcataatacaagaaaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 13743683  T
Q  105 attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13743684 attttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcag 13743772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 12590818 - 12590635
Alignment:
Q  9 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattt 108  Q
    ||||||| ||||||||| ||||||| ||| ||| | || |||||| |||  ||| ||| ||  ||| ||||||||||||||||||||  |||  ||||||    
T  12590818 gattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcattcca-tcagaatcatcatcaaaccctaactttcatattattt 12590720  T
Q  109 tccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12590719 tccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 12590635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 16677167 - 16677348
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 103  Q
    ||||||||| |  |||||||| ||||| || |||||| | | |||||||||||| ||| |||| | ||||| ||||||||||||||||||||||| ||||    
T  16677167 tatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaatt 16677266  T
Q  104 t-attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    | || ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16677267 ttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 17651403 - 17651584
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 103  Q
    ||||||||| |  |||||||| ||||| || |||||| | | |||||||||||| ||| |||| | ||||| ||||||||||||||||||||||| ||||    
T  17651403 tatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaatt 17651502  T
Q  104 t-attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    | || ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17651503 ttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 13007378 - 13007495
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13007378 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 13007476  T
Q  176 ccttaccttagttttgcag 194  Q
    |||||||||||||||||||    
T  13007477 ccttaccttagttttgcag 13007495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 21231015 - 21230951
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcag 21230951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 20311107 - 20311051
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttag 20311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  122 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| ||||||| || | ||| |||||||||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  150 ttatgattattgagagatagtctcacccttaccttagttttg 191  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  150 ttatgattattgagagatagtctcacccttaccttagttttg 191  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  150 ttatgattattgagagatagtctcacccttaccttagttttg 191  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||| ||||||||| ||||| || |||||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 29181164 - 29181109
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  29181164 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 29181109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 31155396 - 31155449
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 31155449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 148619 - 148683
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||  ||| ||||| || |||||  | ||| ||||||||||||||||||||||||    
T  148619 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagttttgcag 148683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 16091078 - 16091130
Alignment:
Q  134 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  16091078 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 16091130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 10381 - 10195
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  10381 acagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccaca 10282  T
Q  101 atttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10281 atttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 1711 - 1525
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  1711 acagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccaca 1612  T
Q  101 atttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1611 atttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 23839068 - 23839253
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||    
T  23839068 acagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccctca 23839167  T
Q  101 atttattttccaaa-attatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23839168 atttatcttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 10986366 - 10986180
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  10986366 acagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctca 10986267  T
Q  101 atttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10986266 atttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttag 10986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 4477731 - 4477912
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 104  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  4477731 tatagattaagttttcattctaaacattacattacaacagaattagcatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 4477830  T
Q  105 attttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4477831 atcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 29614325 - 29614138
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||||||||    
T  29614325 agattaagttttcattctaaacatt-caatacaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttat 29614227  T
Q  107 ttt-ccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614226 ttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 29614138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 18800311 - 18800501
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatt- 103  Q
    ||||||||||| ||||||| | ||||| ||||||||| |||||||||||||||| ||| ||| |||  || ||||||||||||||||||||||||||||     
T  18800311 tatagattaagatttcattttgaacatcacattacaacagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattc 18800410  T
Q  104 tattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18800411 tattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcag 18800501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 23057815 - 23057993
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  23057815 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 23057914  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
     |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  23057915 cttccaaaactatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 930229 - 930087
Alignment:
Q  52 atgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagatt 151  Q
    ||||||| ||||||| ||| ||| || ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||    
T  930229 atgatcattacccattcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagatt 930130  T
Q  152 atgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  930129 atgattattgagagatagtctcacccttaccttagttttgcag 930087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 12168309 - 12168426
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12168309 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 12168407  T
Q  176 ccttaccttagttttgcag 194  Q
    |||||||||||||||||||    
T  12168408 ccttaccttagttttgcag 12168426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 19287218 - 19287335
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19287218 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19287316  T
Q  176 ccttaccttagttttgcag 194  Q
    |||||||||||||||||||    
T  19287317 ccttaccttagttttgcag 19287335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 19785978 - 19785861
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  ||| |||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19785978 aatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19785880  T
Q  176 ccttaccttagttttgcag 194  Q
    |||||||||||||||||||    
T  19785879 ccttaccttagttttgcag 19785861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 19878402 - 19878519
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19878402 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19878500  T
Q  176 ccttaccttagttttgcag 194  Q
    |||||||||||||||||||    
T  19878501 ccttaccttagttttgcag 19878519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 19884178 - 19884295
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19884178 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19884276  T
Q  176 ccttaccttagttttgcag 194  Q
    ||| |||||||||||||||    
T  19884277 cctaaccttagttttgcag 19884295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 21565397 - 21565214
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||| ||||||||  ||| | ||||||||| | |||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||    
T  21565397 acagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctca 21565298  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 183  Q
    ||||  |   |||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  21565297 attttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 34646743 - 34646660
Alignment:
Q  103 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  103 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 25469808 - 25469704
Alignment:
Q  80 atcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctt 179  Q
    |||||||||||||||   |||  |||||||||||||  || ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  25469808 atcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcaccctt 25469711  T
Q  180 accttag 186  Q
    |||||||    
T  25469710 accttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 24512899 - 24512835
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcag 24512835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 31252413 - 31252478
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||| | ||||||||||||||||| ||||| || ||| | ||||| |||||||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 2286823 - 2286769
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||||    
T  2286823 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacct 2286769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 11288758 - 11288668
Alignment:
Q  97 ctcaatttattttccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||||||||||| | || ||| |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || ||||||||||||||    
T  11288758 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttag 11288668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 18659450 - 18659484
Alignment:
Q  151 tatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||| |||||||||||||||||||    
T  18659450 tatgattattgagagttagtctcacccttacctta 18659484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 24441673 - 24441707
Alignment:
Q  151 tatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||| |||||||||||||||||||    
T  24441673 tatgattattgagagttagtctcacccttacctta 24441707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 15458492 - 15458545
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 15458545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 15465087 - 15465140
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 15465140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 28288537 - 28288509
Alignment:
Q  158 attgagagatagtctcacccttaccttag 186  Q
    |||||||||||||||||||||||||||||    
T  28288537 attgagagatagtctcacccttaccttag 28288509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 29415591 - 29415551
Alignment:
Q  151 tatgattattgagagatagtctcacccttaccttagttttg 191  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  29415591 tatgattattgagagttagcctcactcttaccttagttttg 29415551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 20437209 - 20437024
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  20437209 acagtatagattaagttttcattctgaacattacattacaacataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctca 20437110  T
Q  101 atttattttcc-aaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20437109 atttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 41111981 - 41112098
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41111981 aatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41112079  T
Q  176 ccttaccttagttttgcag 194  Q
    |||||||||||||||||||    
T  41112080 ccttaccttagttttgcag 41112098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Original strand, 24476350 - 24476380
Alignment:
Q  155 attattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||||||||||||||||    
T  24476350 attattgagagatagtctcacccttacctta 24476380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 25091448 - 25091418
Alignment:
Q  155 attattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||||||||||||||||    
T  25091448 attattgagagatagtctcacccttacctta 25091418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 18271338 - 18271371
Alignment:
Q  151 tatgattattgagagatagtctcacccttacctt 184  Q
    ||||||||||||||| ||||||||||||||||||    
T  18271338 tatgattattgagagttagtctcacccttacctt 18271371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 18275992 - 18276025
Alignment:
Q  151 tatgattattgagagatagtctcacccttacctt 184  Q
    ||||||||||||||| ||||||||||||||||||    
T  18275992 tatgattattgagagttagtctcacccttacctt 18276025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 111758 - 111946
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||    
T  111758 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat 111857  T
Q  107 tttccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
     |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111858 cttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 111946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 1055 - 1240
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  1055 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttat 1154  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgca 193  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1155 tttccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 50056 - 50241
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  50056 agattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttat 50155  T
Q  107 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgca 193  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50156 tttccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 11211 - 11405
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||| ||||||| ||||||| | ||||| ||||||||| |||||||||||||||| ||| ||| |||  || |||||||||||||||||||||||||    
T  11211 acagtatggattaagatttcattttgaacatcacattacaacagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctca 11310  T
Q  101 att-tattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11311 attctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 11405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 930 - 742
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||| || || ||||||| ||||||| || |||| |||||||| |||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  930 agattaagtttttatcctgaacattatattacaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttat 831  T
Q  107 tttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830 tttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 167 - 354
Alignment:
Q  6 atagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattta 105  Q
    ||||||||||| |||| ||| ||||  | | ||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  167 atagattaagtcttcaatctgaacaccataatacaagaaaattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattta 266  T
Q  106 ttttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  267 ttttccaaaactatgcaattaggtcaa-tttcagaaattatagattatggttattgagagatagtctcacccttaccttagttttgcag 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 14582 - 14398
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctc 99  Q
    |||| |||||||||||||||||||  ||||| ||||||||| |||||||||||||||| |||||||  |||| || ||||||||||||||||||||||||    
T  14582 acagcatagattaagttttcattcggaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctc 14483  T
Q  100 aatttattttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14482 aatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 8751 - 8566
Alignment:
Q  9 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattt 108  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||| |||| ||||||| ||  |||||||||||||||||||||||||||||| ||||||    
T  8751 gattaagttttcattttgaacattaaattacaagagaattaacataatcattacccattcca-tcataatcatcatcaaaccctaaccctcaaattattt 8653  T
Q  109 tccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8652 tccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcag 8566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 2074 - 1889
Alignment:
Q  9 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaatttattt 108  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||| |||| ||||||| ||  ||| |||||||||||||||||||||||||| ||||||    
T  2074 gattaagttttcattatgaacattaaattacaagagaattaacataatcattacccattcca-tcaaaatcatcatcaaaccctaaccctcaaattattt 1976  T
Q  109 tccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1975 tccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcag 1889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 8046009 - 8045824
Alignment:
Q  9 gattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttatt 107  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||| |||  |||||||  |||| || |||  || ||||||||||||||||||||||||    
T  8046009 gattaagttttcattctgaacattatattacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttatt 8045910  T
Q  108 ttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8045909 ttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 8045824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 11847984 - 11848177
Alignment:
Q  8 agattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccct-cataatcatcatcaaaccctaaccctcaatttat 106  Q
    |||||||||||||||||| ||||||| |||| || || ||||||||||||| ||||||| || || || |||| ||||||||||||||||||||||| ||    
T  11847984 agattaagttttcattctgaacattatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgat 11848083  T
Q  107 tttc------caaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||       ||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11848084 tttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 11848177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 53483650 - 53483760
Alignment:
Q  76 aatcatcatcaaaccctaaccctca-atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 174  Q
    |||||||||||||||||||   ||| |||  ||||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  53483650 aatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctca 53483748  T
Q  175 cccttaccttag 186  Q
    ||||||||||||    
T  53483749 cccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 15408139 - 15408195
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 15408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    ||||||||||||||||| |||||||| |||||  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 180  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  150 ttatgattattgagagatagtctcacccttaccttagttttg 191  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 16146885 - 16146830
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  16146885 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 16146830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 27906266 - 27906321
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||| |||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccacccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Original strand, 15069781 - 15069811
Alignment:
Q  155 attattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||||||||||||||||    
T  15069781 attattgagagatagtctcacccttacctta 15069811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Original strand, 15076381 - 15076411
Alignment:
Q  155 attattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||||||||||||||||    
T  15076381 attattgagagatagtctcacccttacctta 15076411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 14912081 - 14912138
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||| |||||||||||||    
T  14912081 tcaattttcagaagttatatattacaatcattgagagttagtctaacccttaccttag 14912138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 30730 - 30921
Alignment:
Q  5 tatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatac-ccatacccctcataatcatcatcaaaccctaaccctcaatt 103  Q
    ||||||||| |  ||||||||  |||| || |||||| | | |||||||||||  ||| |||| ||||||| ||||||||||||||||||| ||||||||    
T  30730 tatagattaggaattcattctgcacatcactttacaacatatttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaatt 30829  T
Q  104 t-attttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    | |  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30830 ttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 30921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 18043 - 18233
Alignment:
Q  6 atagattaagttttcattctaaacattacattacaat-agaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctcaattt 104  Q
    |||| |||||||||||||||  |||| |||||||||  ||||||||||||| || ||||  | ||| | | ||||||||| ||||| |||||||||||||    
T  18043 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgttagaatcatcattaaaccttaaccctcaattt 18142  T
Q  105 attttccaaaat-tatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    ||||||| |||  || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18143 attttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 18233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 3479 - 3295
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgat-caatacccatacccctcataatcatcatcaaaccctaaccctc 99  Q
    ||||||||||||||| ||||||||| ||||| ||||||||| | |||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||    
T  3479 acagtatagattaagatttcattctgaacatcacattacaacaaaattaacatgattcattacccattcccctcagaatcatcatcaaaccctaaccctc 3380  T
Q  100 aatttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 183  Q
    |||||  |  ||||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  3379 aattttatccccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 3807 - 3624
Alignment:
Q  1 acagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccatacccctcataatcatcatcaaaccctaaccctca 100  Q
    ||||||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  3807 acagtatagattaagatttcattccgaacatcacattacaacataattaacatgatcattacccatccccctcagaatcatcatcaaaccctaaccctca 3708  T
Q  101 atttattttccaaaattatgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 183  Q
    ||||  |   |||  ||| |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  3707 attttatcctcaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 1841 - 1727
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1841 aatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 1743  T
Q  176 ccttaccttagttttg 191  Q
    ||||||||||||||||    
T  1742 ccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 5864 - 5750
Alignment:
Q  76 aatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 175  Q
    ||||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  5864 aatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 5766  T
Q  176 ccttaccttagttttg 191  Q
    ||||||||||||||||    
T  5765 ccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 904 - 991
Alignment:
Q  103 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 190  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 8049 - 8136
Alignment:
Q  103 ttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 190  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 45384 - 45268
Alignment:
Q  76 aatcatcatcaaaccctaaccctca-atttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 174  Q
    |||||||||||||||||||   ||| |||  ||||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  45384 aatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctca 45286  T
Q  175 cccttaccttagttttgc 192  Q
    |||||||||||| |||||    
T  45285 cccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 40587 - 40523
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcag 40523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 60441 - 60474
Alignment:
Q  151 tatgattattgagagatagtctcacccttacctt 184  Q
    ||||||||||||||| ||||||||||||||||||    
T  60441 tatgattattgagagttagtctcacccttacctt 60474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 17643 - 17708
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag-ttttgcag 194  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcag 17708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 135473 - 135529
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 135529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 22646 - 22584
Alignment:
Q  132 attttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcag 22584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 35495 - 35438
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||| |||||||||||||    
T  35495 tcaattttcagaagttatacattacaatcattgagagttagtcttacccttaccttag 35438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 1453 - 1513
Alignment:
Q  134 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||||||||| ||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcag 1513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  122 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  130 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 680 - 778
Alignment:
Q  97 ctcaatttattttccaaaattatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 194  Q
    |||||||||||||| | || ||| |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || ||||||||||||||||||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcag 778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 189  Q
    ||||||||| ||||||||| |||||||| |||||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 493082 - 493028
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttaccttag 493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 5480 - 5522
Alignment:
Q  157 tattgagagatagtctcacccttaccttagttttgcagtataa 199  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  5480 tattgaaagatagtctcacccttaccttagttttgcagaataa 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 5922 - 5857
Alignment:
Q  121 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 23624 - 23569
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttag 23569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 79545 - 79490
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  79545 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 79490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 721 - 676
Alignment:
Q  139 gaaattatagattatgattattgagagatagtctcacccttacctt 184  Q
    ||||||||| |||| ||| |||||||| ||||||||||||||||||    
T  721 gaaattatacattaagatcattgagagttagtctcacccttacctt 676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 13947 - 13894
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 186  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 13894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 732 - 788
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||| |||||||    
T  732 tcaattttcagaagttatatattataatcattgagagttagcctcacccctacctta 788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 11630 - 11681
Alignment:
Q  136 tcagaaattataga--ttatgattattgagagatagtctcacccttacctta 185  Q
    |||||||||||| |  |||| ||||||||||| |||||||||||||||||||    
T  11630 tcagaaattatataatttataattattgagagttagtctcacccttacctta 11681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 73285 - 73337
Alignment:
Q  131 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 183  Q
    |||||||| |||||||| |||||||| ||||| ||||| || |||||||||||    
T  73285 aattttcataaattatacattatgatcattgaaagataatcccacccttacct 73337  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 121902 - 121958
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||  ||||| ||||| || |||||||| ||| |||||||||||||||    
T  121902 tcaattttcagattttatatattataatcattgagagttagcctcacccttacctta 121958  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 132778 - 132834
Alignment:
Q  129 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    ||||||||||||  ||||| ||||| || |||||||| ||| |||||||||||||||    
T  132778 tcaattttcagattttatatattataatcattgagagttagcctcacccttacctta 132834  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 69749 - 69801
Alignment:
Q  133 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 185  Q
    |||||| |||||||| |||| ||| ||||| || |||||||||||||||||||    
T  69749 ttttcataaattatatattaagatcattgaaagttagtctcacccttacctta 69801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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