View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0654_low_2 (Length: 485)

Name: NF0654_low_2
Description: NF0654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0654_low_2
NF0654_low_2
[»] chr3 (10 HSPs)
chr3 (188-433)||(46749754-46749998)
chr3 (14-120)||(46749623-46749729)
chr3 (343-425)||(6976138-6976220)
chr3 (345-407)||(10055134-10055196)
chr3 (347-427)||(7319022-7319102)
chr3 (343-425)||(12103996-12104078)
chr3 (343-425)||(12105190-12105272)
chr3 (347-427)||(45135641-45135721)
chr3 (343-425)||(23535698-23535780)
chr3 (343-425)||(50899327-50899409)
[»] chr2 (6 HSPs)
chr2 (275-427)||(34027590-34027729)
chr2 (345-427)||(21988196-21988278)
chr2 (275-354)||(20156488-20156566)
chr2 (281-347)||(1188814-1188880)
chr2 (336-385)||(37982519-37982568)
chr2 (388-427)||(20156417-20156456)
[»] chr7 (12 HSPs)
chr7 (275-427)||(40098360-40098499)
chr7 (343-427)||(19251967-19252051)
chr7 (14-73)||(3634577-3634636)
chr7 (343-425)||(10617317-10617399)
chr7 (281-335)||(48999537-48999591)
chr7 (295-427)||(9824749-9824879)
chr7 (295-427)||(10726674-10726804)
chr7 (286-319)||(3635023-3635056)
chr7 (343-427)||(48152405-48152489)
chr7 (360-425)||(3796777-3796842)
chr7 (343-392)||(45272851-45272900)
chr7 (343-424)||(45278149-45278230)
[»] chr4 (14 HSPs)
chr4 (281-427)||(37369504-37369660)
chr4 (345-427)||(24887396-24887478)
chr4 (292-427)||(16019749-16019884)
chr4 (281-376)||(28099796-28099891)
chr4 (344-425)||(9163619-9163700)
chr4 (343-425)||(20021874-20021956)
chr4 (347-427)||(5104883-5104963)
chr4 (345-425)||(12913791-12913871)
chr4 (361-424)||(7853885-7853947)
chr4 (343-425)||(11090709-11090791)
chr4 (343-425)||(56444442-56444524)
chr4 (345-424)||(20539847-20539925)
chr4 (347-425)||(36478887-36478965)
chr4 (343-424)||(28371346-28371427)
[»] chr5 (4 HSPs)
chr5 (281-427)||(9688442-9688588)
chr5 (288-427)||(28593073-28593222)
chr5 (345-427)||(9840048-9840130)
chr5 (369-427)||(28346606-28346664)
[»] chr1 (6 HSPs)
chr1 (281-427)||(42658452-42658610)
chr1 (275-354)||(1923240-1923318)
chr1 (345-427)||(27199018-27199100)
chr1 (343-425)||(9577170-9577252)
chr1 (343-427)||(26284255-26284339)
chr1 (388-457)||(1923139-1923208)
[»] chr8 (7 HSPs)
chr8 (281-376)||(23811795-23811890)
chr8 (328-425)||(23609496-23609593)
chr8 (345-427)||(24319158-24319240)
chr8 (343-425)||(39189525-39189607)
chr8 (333-406)||(29930398-29930471)
chr8 (174-252)||(23811686-23811766)
chr8 (343-425)||(4949632-4949714)
[»] chr6 (3 HSPs)
chr6 (275-354)||(30878662-30878740)
chr6 (345-427)||(8634758-8634840)
chr6 (388-427)||(30878772-30878811)
[»] scaffold0287 (2 HSPs)
scaffold0287 (14-73)||(11449-11508)
scaffold0287 (286-319)||(11029-11062)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 188 - 433
Target Start/End: Original strand, 46749754 - 46749998
Alignment:
Q  188 tcttaaaaaataattggcaataatttattatgacagattttagaaatgaatataatagtgtagtatagtgttgnnnnnnnnnnnnnncatccttaagcat 287  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||              | |||||||||||    
T  46749754 tcttaaaaaataattggcaataatttattatgacacattttagaaatgaatataatagtgtagtacagtgttgaaaaaaataaaaa-cgtccttaagcat 46749852  T
Q  288 ctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaat 387  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46749853 ctaggaaaaatacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaat 46749952  T
Q  388 cttgagaatctcttaaaatcgtaaaagtcattaaaatcttcaataa 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46749953 cttgagaatctcttaaaatcgtaaaagtcattaaaatcttcaataa 46749998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 46749623 - 46749729
Alignment:
Q  14 agaggaaggtcatttattaccaacggtggattgtgagactaccttcaccagaataatgttctacttcaccagactacctcgtcaaataaaatccctatca 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46749623 agaggaaggtcatttattaccaacggtcgattgtgagactaccttcaccggaataatgttctacttcaccagactacctcgtcaaataaaatccctatca 46749722  T
Q  114 gttatac 120  Q
     ||||||    
T  46749723 attatac 46749729  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 6976138 - 6976220
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||| ||||||| ||||||||||||||  ||||||||| | ||| |||||||| |||||||||||||||||    
T  6976138 tttaaaatcttatgatgtaaatccattgaaatccaaattgtaaatcttgatagtcttttaaaatcataaaagtcattaaaatc 6976220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 10055196 - 10055134
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatc 407  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  10055196 taaaatctttgaatataaatcctttgaaatccaaattacaaatcttgagaatcttttaaaatc 10055134  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 7319022 - 7319102
Alignment:
Q  347 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||| ||| ||||||| || |||||  ||||||||||||| | | ||| |||||||| |||||||||||||||||||    
T  7319022 aaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaatcttaaaagtcattaaaatctt 7319102  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 12103996 - 12104078
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||| ||||||| ||||||||||||||  |||||  || | ||| |||||||| | |||||||||||||||    
T  12103996 tttaaaatcttatgatgtaaatccattgaaatccaaattgaaaatcccgatagtcttttaaaatcatgaaagtcattaaaatc 12104078  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 12105190 - 12105272
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||| ||| ||| ||||||| ||||||||||||||  |||| |||| | ||| |||||||| | |||||||||||||||    
T  12105190 tttaaaatattatgatgtaaatccattgaaatccaaattgaaaattttgatagtcttttaaaatcatgaaagtcattaaaatc 12105272  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 45135641 - 45135721
Alignment:
Q  347 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||| ||| ||||||| || |||||  ||||||||||||| | | ||| |||||||  |||||||||||||||||||    
T  45135641 aaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaattttaaaagtcattaaaatctt 45135721  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 23535780 - 23535698
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    ||||||||||||   | ||||||| ||||||||||||||  ||||||||| | | | |||||||| |||||||| ||||||||    
T  23535780 tttaaaatcttatagtgtaaatccattgaaatccaaattgtaaatcttgatagttttttaaaatcataaaagtcgttaaaatc 23535698  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 50899409 - 50899327
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||| ||||| | ||||||||||||||  ||||  ||| | ||| |||||||| ||||| |||||||||||    
T  50899409 tttaaaatcttatgatgtaaattcattgaaatccaaattgaaaattctgatagtcttttaaaatcataaaaatcattaaaatc 50899327  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 427
Target Start/End: Complemental strand, 34027729 - 34027590
Alignment:
Q  275 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaat 374  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||    
T  34027729 catccataagcatctaggaaaaacacaattaacttcttgatataa-tccattgaaatcttgatagtcttttaaaatcttaagatataaatcccttgaaat 34027631  T
Q  375 ccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |            ||||||||||| |||||||| |||||||||||||||||||    
T  34027630 c------------cttgagaatcttttaaaatcctaaaagtcattaaaatctt 34027590  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 427
Target Start/End: Original strand, 21988196 - 21988278
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||| ||| ||||||| || |||||| ||||||||||||| | ||||| |||||||| |||||||||||||||||||    
T  21988196 taaaatcttaagatgtaaatcctttaaaatcccaattacaaatcttaacaatcttttaaaatcttaaaagtcattaaaatctt 21988278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 20156566 - 20156488
Alignment:
Q  275 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta 354  Q
    ||||| ||||||| || |||||||||||||||||||||||||| |||| || |||||||||| |||  ||||||||||||    
T  20156566 catccataagcatgtatgaaaaacacaattaacttcttgatat-aatctatcgaaatcttgatagtattttaaaatctta 20156488  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 1188880 - 1188814
Alignment:
Q  281 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaa 347  Q
    |||||||||| || |||||||||||||||||| |||||||||| | |||||||||| |||| |||||    
T  1188880 taagcatctaagataaacacaattaacttcttaatataaatccttggaaatcttgatagtcttttaa 1188814  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 37982519 - 37982568
Alignment:
Q  336 aaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaa 385  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  37982519 aaagtcttataaaatcttaggatataaattccttgaaatccaaattacaa 37982568  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 20156456 - 20156417
Alignment:
Q  388 cttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  20156456 cttgagaatcttttaaaatcctaaaagtcattaaaatctt 20156417  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 275 - 427
Target Start/End: Original strand, 40098360 - 40098499
Alignment:
Q  275 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaat 374  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||    
T  40098360 catccataagcatctatgaaaaacacaattaacttcttgatataa-tccattgaaatcttgatagtcttttaaaatcttaagatataaatcccttgaaat 40098458  T
Q  375 ccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |            ||||||||||| |||||||| |||||||||||||||||||    
T  40098459 c------------cttgagaatcttttaaaatcctaaaagtcattaaaatctt 40098499  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 427
Target Start/End: Original strand, 19251967 - 19252051
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||||| ||| ||||||| ||||||||||||||  ||||| | ||| ||| |||||||| | |||||||||||||||||    
T  19251967 tttaaaatcttatgatgtaaatccattgaaatccaaattgtaaatcctaagagtcttttaaaatcatgaaagtcattaaaatctt 19252051  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 3634577 - 3634636
Alignment:
Q  14 agaggaaggtcatttattaccaacggtggattgtgagactaccttcaccagaataatgtt 73  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||| || |||||||||    
T  3634577 agaggaaggtcgtttgttaccaacggtggattgtgagactcccttcatcaaaataatgtt 3634636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 10617317 - 10617399
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||| ||| ||| ||||||| ||||||| ||||||  ||||| ||| |||||||||||||| | |||||||||||||||    
T  10617317 tttaaaattttatgatgtaaatccattgaaattcaaattgtaaatcatgataatctcttaaaatcatgaaagtcattaaaatc 10617399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 48999537 - 48999591
Alignment:
Q  281 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttg 335  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||||||||    
T  48999537 taagcacctaggaaaaacacaattaaattattgatataaatcctttgaaatcttg 48999591  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 427
Target Start/End: Complemental strand, 9824879 - 9824749
Alignment:
Q  295 aaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgaga 394  Q
    |||||||||||| |||||| |||||||||| ||||||||||| |||   ||||||| ||| |||||| ||   || ||||||||||||||| |||| | |    
T  9824879 aaacacaattaatttcttgttataaatccagtgaaatcttgatagtatcttaaaattttatgatatatat--attaaaatccaaattacaattctttata 9824782  T
Q  395 atctcttaaaatcgtaaaagtcattaaaatctt 427  Q
     ||  |||||||| ||||| ||||| |||||||    
T  9824781 gtcgtttaaaatcttaaaactcattgaaatctt 9824749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 427
Target Start/End: Complemental strand, 10726804 - 10726674
Alignment:
Q  295 aaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgaga 394  Q
    |||||||||||| |||||| |||||||||| ||||||||||| |||   ||||||| ||| |||||| ||   || ||||||||||||||| |||| | |    
T  10726804 aaacacaattaatttcttgttataaatccagtgaaatcttgatagtatcttaaaattttatgatatatat--attaaaatccaaattacaattctttata 10726707  T
Q  395 atctcttaaaatcgtaaaagtcattaaaatctt 427  Q
     ||  |||||||| ||||| ||||| |||||||    
T  10726706 gtcgtttaaaatcttaaaactcattgaaatctt 10726674  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 3635023 - 3635056
Alignment:
Q  286 atctaggaaaaacacaattaacttcttgatataa 319  Q
    ||||||||||||||||||||||||||||||||||    
T  3635023 atctaggaaaaacacaattaacttcttgatataa 3635056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 427
Target Start/End: Complemental strand, 48152489 - 48152405
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||| | | |||| |||||| ||||||| ||||||||||||||| | | | | |||||||| ||||||| |||||||||||    
T  48152489 tttaaaatatcaagatacaaatcctttgaaattcaaattacaaatcttaatagttttttaaaatcttaaaagtaattaaaatctt 48152405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 3796842 - 3796777
Alignment:
Q  360 taaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    ||||||| ||||||||||||||  ||||| ||| | ||| |||||||| ||||||||||| |||||    
T  3796842 taaatccattgaaatccaaattgtaaatcctgatagtcttttaaaatcataaaagtcatttaaatc 3796777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 45272851 - 45272900
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttga 392  Q
    |||||||||||| ||| ||||||| ||||||||||||||| |||| ||||    
T  45272851 tttaaaatcttatgatgtaaatccattgaaatccaaattataaattttga 45272900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 424
Target Start/End: Original strand, 45278149 - 45278230
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 424  Q
    |||||||| ||| ||| ||||||| ||||||||||||||  ||||||||| | ||| | ||||||   ||||||||||||||    
T  45278149 tttaaaatgttatgatgtaaatccattgaaatccaaattgtaaatcttgatagtctttaaaaatcactaaagtcattaaaat 45278230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 281 - 427
Target Start/End: Complemental strand, 37369660 - 37369504
Alignment:
Q  281 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta----------ggatataaatcccttg 370  Q
    ||||||||||| ||||||||||||   || ||||||||||||| ||||||| |||| |||| ||||||||||||          | ||||||||||||||    
T  37369660 taagcatctagaaaaaacacaattggtttgttgatataaatcctttgaaattttgatagtcttttaaaatcttataaaatctcagaatataaatcccttg 37369561  T
Q  371 aaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  37369560 aaatccaaattacaaatcttaagaatcttttaaaatcttaaaagtcattaaaatctt 37369504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 345 - 427
Target Start/End: Complemental strand, 24887478 - 24887396
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||    
T  24887478 taaaagcttaggatataaatcccttgaaatccaaattacaaatcttaagtatcttttaaaatcttaaaagtcattaaaatctt 24887396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 292 - 427
Target Start/End: Original strand, 16019749 - 16019884
Alignment:
Q  292 gaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttg 391  Q
    |||||||||||||  ||||||| ||||||||  |||||||||||| |||| |||||||||||| |||| |||||| || ||||||| || | |||| |||    
T  16019749 gaaaaacacaattgccttcttgttataaatcttttgaaatcttgatagtcttttaaaatcttatgatacaaatcctttaaaatccatatgataaattttg 16019848  T
Q  392 agaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    | | ||| |||||||| |||||||||| ||||||||    
T  16019849 atagtcttttaaaatcttaaaagtcatgaaaatctt 16019884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 28099891 - 28099796
Alignment:
Q  281 taagcatctaggaaaaacac----aattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatcc 376  Q
    ||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||   |||| |||||||||||| |||||||||||||||||||||    
T  28099891 taagcatctaggaaaaacacgcacaattaacttcttgatataa-tccattgaaatctt---agtcttttaaaatcttaagatataaatcccttgaaatcc 28099796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 9163619 - 9163700
Alignment:
Q  344 ttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    ||||||||||| | ||||||||| ||||||||||||||  ||||||||| | ||| |||||||| |||||||||||||||||    
T  9163619 ttaaaatcttatggtataaatccattgaaatccaaattgtaaatcttgatattcttttaaaatcataaaagtcattaaaatc 9163700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 20021874 - 20021956
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||| ||||||| ||||||||||||||  ||||| ||| | ||| |||||||| | |||||||||||||||    
T  20021874 tttaaaatcttatgatttaaatccattgaaatccaaattgaaaatcctgatagtcttttaaaatcatgaaagtcattaaaatc 20021956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 5104883 - 5104963
Alignment:
Q  347 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||| ||| ||||||| || |||||  ||||||||||||| | | ||| |||||||| |||||||||||||||||||    
T  5104883 aaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaatcttaaaagtcattaaaatctt 5104963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 12913791 - 12913871
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||| ||| ||||||| ||||||||||||||  ||||| ||| | ||| |||||||| | |||||||||||||||    
T  12913791 taaaatcttatgatgtaaatccattgaaatccaaattgaaaatcctgatagtcttttaaaatcatgaaagtcattaaaatc 12913871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 7853947 - 7853885
Alignment:
Q  361 aaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 424  Q
    |||||| |||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||    
T  7853947 aaatcctttgaaatccaaattacaaat-ttgatagtcttttaaaatcttaaaagtcattaaaat 7853885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 11090709 - 11090791
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||| ||||||| ||||||||||||||| ||| ||| | | ||| |||||||| | ||||||||| |||||    
T  11090709 tttaaaatcttatgatgtaaatccattgaaatccaaattataaaacttcatagtcttttaaaatcatgaaagtcattgaaatc 11090791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 56444524 - 56444442
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||| |||||||  |||||||||||||| ||||| ||| | ||| |||||||| | ||| |||||||||||    
T  56444524 tttaaaatcttatgatgtaaatccaatgaaatccaaattaaaaatcctgatagtcttttaaaatcatgaaaatcattaaaatc 56444442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 20539847 - 20539925
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 424  Q
    |||||||||| ||||||| |||  || ||| |||||||||||| |||| ||||| |||||||| |||||||| |||||||    
T  20539847 taaaatcttatgatataa-tcctatgtaattcaaattacaaattttgataatcttttaaaatcttaaaagtcgttaaaat 20539925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 36478965 - 36478887
Alignment:
Q  347 aaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||| ||| ||| ||||||| |||||||| |||||  ||||||||| | ||| |||||| ||| |||||||||||||||    
T  36478965 aaattttatgatgtaaatccattgaaatctaaattgtaaatcttgatagtcttttaaaaccgtgaaagtcattaaaatc 36478887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 424
Target Start/End: Original strand, 28371346 - 28371427
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaat 424  Q
    |||||||||||| ||| ||||||  |||||||||| |||  ||||| ||| ||||| |||||| | | ||||||||||||||    
T  28371346 tttaaaatcttatgatgtaaatctattgaaatccatattgaaaatcctgataatcttttaaaaccatcaaagtcattaaaat 28371427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 427
Target Start/End: Complemental strand, 9688588 - 9688442
Alignment:
Q  281 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaat 380  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||| |||||||||||| |||| |||||||||||| |||  |||||| |||||||||| ||    
T  9688588 taagcatctaggaaaaatacaattgccttcttgttataaatcctttgaaatcttgatagtcttttaaaatcttatgatgcaaatcctttgaaatccatat 9688489  T
Q  381 tacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
     | ||||||||| | ||| |||||||| |||||||||| | ||||||    
T  9688488 gataaatcttgatagtcttttaaaatcttaaaagtcatgacaatctt 9688442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 427
Target Start/End: Complemental strand, 28593222 - 28593073
Alignment:
Q  288 ctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttagga----------tataaatcccttgaaatcca 377  Q
    |||| |||||||||||| |||| ||||||||||||| |||||||| ||| |||| ||||||||||||  |          ||||||||| ||||||||||    
T  28593222 ctagaaaaaacacaattgacttgttgatataaatcctttgaaatcctgatagtcttttaaaatcttataaaatctcataatataaatcctttgaaatcca 28593123  T
Q  378 aattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  28593122 aattacaaatcttgagaatcttttaaaatcttaaaagtcattaaaatctt 28593073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 427
Target Start/End: Complemental strand, 9840130 - 9840048
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||  ||| ||||||| || |||||| ||||||||||||| | ||||| |||||||| ||||||||||| |||||||    
T  9840130 taaaatcttcagatgtaaatcctttaaaatcccaattacaaatcttaacaatcttttaaaatcttaaaagtcattcaaatctt 9840048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 28346664 - 28346606
Alignment:
Q  369 tgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||| |||||||||||| |||| | ||| |||||||| |||||||||||||||||||    
T  28346664 tgaaattcaaattacaaattttgatagtcttttaaaatcttaaaagtcattaaaatctt 28346606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 427
Target Start/End: Original strand, 42658452 - 42658610
Alignment:
Q  281 taagcatctaggaaaaacacaattaactt--cttgatataaatccattgaaatcttgaaagtcatttaaa----------atcttaggatataaatccct 368  Q
    |||||||| |||||||||||||||||  |  |||||||||||||| |||||||||||| ||||  |||||          ||||||| |||||||||| |    
T  42658452 taagcatccaggaaaaacacaattaatatatcttgatataaatcctttgaaatcttgatagtctcttaaaatcttataaaatcttagtatataaatccat 42658551  T
Q  369 tgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  42658552 tgaaatccaaattacaaatcttgagaatcttttaaaatcttaaaagtcattgaaatctt 42658610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 1923318 - 1923240
Alignment:
Q  275 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta 354  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  1923318 catccataagcatctaggaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtcttttaaaatctta 1923240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 427
Target Start/End: Original strand, 27199018 - 27199100
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||||| | ||| |||||||| |||||||||||||||||||    
T  27199018 taaaatcttgtgatataaatcctttgaaatccaaattaccaatcttgatagtcttttaaaatcttaaaagtcattaaaatctt 27199100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 9577252 - 9577170
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    ||||||||||||  || ||||||| ||||||||||||||| ||||| ||| | ||| |||||||| | |||||||||||||||    
T  9577252 tttaaaatcttataatgtaaatccattgaaatccaaattataaatcctgaaagtcttttaaaatcatgaaagtcattaaaatc 9577170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 427
Target Start/End: Original strand, 26284255 - 26284339
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||| | ||||||||||  ||||||||||||||| || | |||| | ||| |||||||| ||||||| |||||||||||    
T  26284255 tttaaaatctcatgatataaatcatttgaaatccaaattataagttttgatagtcttttaaaatcttaaaagtaattaaaatctt 26284339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 457
Target Start/End: Complemental strand, 1923208 - 1923139
Alignment:
Q  388 cttgagaatctcttaaaatcgtaaaagtcattaaaatcttcaataannnnnnnaaatccactagactttt 457  Q
    ||||||||||| |||||||| |||||||||||||||||||  ||||       |||||||||||||||||    
T  1923208 cttgagaatcttttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaatccactagactttt 1923139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 376
Target Start/End: Original strand, 23811795 - 23811890
Alignment:
Q  281 taagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatcc 376  Q
    |||| ||||||||||||||||||||||||||| || |||| || || ||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  23811795 taagtatctaggaaaaacacaattaacttcttaatctaaaccctttaaaatcttgatagtcttttaaaatcttagtatataaatcccttgaaatcc 23811890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 425
Target Start/End: Original strand, 23609496 - 23609593
Alignment:
Q  328 aaatcttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgt-aaaagtcattaaaatc 425  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| | ||||||||||||||||    
T  23609496 aaatcttgatagtcttttaaaattttaggatataaatcccttgaaatccaaattacaaaccttgaaaatat-ttaaaatcttaaaaagtcattaaaatc 23609593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 427
Target Start/End: Original strand, 24319158 - 24319240
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||    
T  24319158 taaaatcttaggatatatatttcttgaaatccaaattacaaatcttgaaaatattttaaaatcttaaaagtcattaaaatctt 24319240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 39189607 - 39189525
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||| ||||||  ||||||||||||||  ||||| ||| | ||| |||||||| | |||||||||||||||    
T  39189607 tttaaaatcttatgatgtaaatctattgaaatccaaattgaaaatcctgatagtcttttaaaatcatgaaagtcattaaaatc 39189525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 29930471 - 29930398
Alignment:
Q  333 ttgaaagtcatttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaat 406  Q
    |||||| ||||||||||||||| ||| ||||||| |||||||||||||   ||||||||| | ||| |||||||    
T  29930471 ttgaaaatcatttaaaatcttatgatgtaaatccattgaaatccaaatagtaaatcttgatagtcttttaaaat 29930398  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 23811686 - 23811766
Alignment:
Q  174 tacacgtagactcgtcttaaaaaataa-ttggcaataatttattat-gacagattttagaaatgaatataatagtgtagta 252  Q
    ||||| |||| ||||||||||||| || ||||| | |||||||||  |||| ||||||||||||||||||||||| |||||    
T  23811686 tacacatagagtcgtcttaaaaaaaaaattggctaaaatttattaccgacacattttagaaatgaatataatagtatagta 23811766  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 4949714 - 4949632
Alignment:
Q  343 tttaaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatc 425  Q
    |||||||||||| ||||||||||  ||||||||||||||| |||| || | | ||| |||||||| | ||| | |||||||||    
T  4949714 tttaaaatcttatgatataaatctattgaaatccaaattataaattttaatagtcttttaaaatcatcaaaattattaaaatc 4949632  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 30878662 - 30878740
Alignment:
Q  275 catccttaagcatctaggaaaaacacaattaacttcttgatataaatccattgaaatcttgaaagtcatttaaaatctta 354  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  30878662 catccataagcatttaggaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtcttttaaaatctta 30878740  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 427
Target Start/End: Complemental strand, 8634840 - 8634758
Alignment:
Q  345 taaaatcttaggatataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    |||||||||| ||| ||||||| || ||||||  |||||||||||| | ||||| |||||||| ||||||||||| |||||||    
T  8634840 taaaatcttaagatgtaaatcctttaaaatccctattacaaatcttaacaatcttttaaaatcttaaaagtcattcaaatctt 8634758  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 30878772 - 30878811
Alignment:
Q  388 cttgagaatctcttaaaatcgtaaaagtcattaaaatctt 427  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  30878772 cttgagaatcttttaaaatcctaaaagtcattaaaatctt 30878811  T

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Target: scaffold0287 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 11508 - 11449
Alignment:
Q  14 agaggaaggtcatttattaccaacggtggattgtgagactaccttcaccagaataatgtt 73  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||| || |||||||||    
T  11508 agaggaaggtcgtttgttaccaacggtggattgtgagactcccttcatcaaaataatgtt 11449  T

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Target: scaffold0287; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 11062 - 11029
Alignment:
Q  286 atctaggaaaaacacaattaacttcttgatataa 319  Q
    ||||||||||||||||||||||||||||||||||    
T  11062 atctaggaaaaacacaattaacttcttgatataa 11029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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